Adenosine deaminase 3D structures: Difference between revisions
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{{#tree:id=OrganizedByTopic|openlevels=0| | {{#tree:id=OrganizedByTopic|openlevels=0| | ||
*Adenosine deaminase | *Adenosine deaminase | ||
**[[3iar]] – hADA + Ni - human | **[[3iar]] – hADA + Ni - human | ||
**[[7rtg]] – hADA1 + Zn | **[[7rtg]] – hADA1 + Zn | ||
**[[3lgd]] – hADA2 + Zn | **[[3lgd]] – hADA2 + Zn | ||
**[[1vfl]] – bADA + Zn - bovine | **[[1vfl]] – bADA + Zn - bovine | ||
**[[3mvt]] – mADA – mouse | **[[3mvt]] – mADA – mouse | ||
**[[3mvi]] – mADA + Zn | **[[3mvi]] – mADA + Zn | ||
**[[3ou8]] – PaADA + Zn – ''Pseudomonas aeruginosa'' | **[[3ou8]] – PaADA + Zn – ''Pseudomonas aeruginosa'' | ||
**[[2amx]] – ADA + Co – ''Plasmodium yoeli'' | **[[2amx]] – ADA + Co – ''Plasmodium yoeli'' | ||
**[[4gxw]] – ADA + Zn – ''Burkholderia ambifaria'' | **[[4gxw]] – ADA + Zn – ''Burkholderia ambifaria'' | ||
**[[8fnv]], [[8hrc]] – EcADA – ''Escherichia coli'' – Cryo EM | **[[8fnv]], [[8hrc]] – EcADA – ''Escherichia coli'' – Cryo EM | ||
*Adenosine deaminase complex with nucleotide | *Adenosine deaminase complex with nucleotide | ||
**[[1krm]] – bADA + Zn + adenosine analog | **[[1krm]] – bADA + Zn + adenosine analog | ||
**[[1add]] – mADA + Zn + deaza-adenosine | **[[1add]] – mADA + Zn + deaza-adenosine | ||
**[[3km8]] – mADA (mutant) + Zn + deaza-adenosine | **[[3km8]] – mADA (mutant) + Zn + deaza-adenosine | ||
**[[2ada]] – mADA + Zn + transition state analog | **[[2ada]] – mADA + Zn + transition state analog | ||
**[[1fkw]], [[1fkx]], [[1uio]], [[1uip]] – mADA (mutant) + Zn + adenosine analog | **[[1fkw]], [[1fkx]], [[1uio]], [[1uip]] – mADA (mutant) + Zn + adenosine analog | ||
**[[1a4m]] – mADA + Zn + adenosine analog | **[[1a4m]] – mADA + Zn + adenosine analog | ||
**[[2pgf]] – PvADA + Zn + adenosine – ''Plasmodium vivax'' | **[[2pgf]] – PvADA + Zn + adenosine – ''Plasmodium vivax'' | ||
**[[2pgr]] – PvADA + Zn + adenosine analog | **[[2pgr]] – PvADA + Zn + adenosine analog | ||
**[[2qvn]] – PvADA + guanosine | **[[2qvn]] – PvADA + guanosine | ||
**[[3pan]] – PaADA + Zn + hypoxanthine | **[[3pan]] – PaADA + Zn + hypoxanthine | ||
**[[3pao]] – PaADA + Zn + adenine | **[[3pao]] – PaADA + Zn + adenine | ||
**[[3rys]] – ADA + Zn + adenine – ''Arthrobacter aurescens'' | **[[3rys]] – ADA + Zn + adenine – ''Arthrobacter aurescens'' | ||
**[[6ii7]] – ADA (mutant) + Zn + hypoxanthine + inosine – ''Plasmodium falciparum'' | **[[6ii7]] – ADA (mutant) + Zn + hypoxanthine + inosine – ''Plasmodium falciparum'' | ||
*Adenosine deaminase complex with inhibitor | *Adenosine deaminase complex with inhibitor | ||
**[[3lgg]] – hADA2 + Zn + coformycin | **[[3lgg]] – hADA2 + Zn + coformycin | ||
**[[1ndv]], [[1ndw]], [[1ndy]], [[1ndz]], [[1o5r]], [[1qxl]], [[1uml]], [[1v79]], [[1v7a]], [[1wxy]], [[1wxz]], [[2e1w]], [[2z7g]] – bADA + Zn + inhibitor | **[[1ndv]], [[1ndw]], [[1ndy]], [[1ndz]], [[1o5r]], [[1qxl]], [[1uml]], [[1v79]], [[1v7a]], [[1wxy]], [[1wxz]], [[2e1w]], [[2z7g]] – bADA + Zn + inhibitor | ||
**[[1a4l]] – mADA + Zn + inhibitor | **[[1a4l]] – mADA + Zn + inhibitor | ||
**[[3ewc]] – PvADA + Zn + inhibitor | **[[3ewc]] – PvADA + Zn + inhibitor | ||
**[[3ewd]] – PvADA (mutant) + Zn + inhibitor | **[[3ewd]] – PvADA (mutant) + Zn + inhibitor | ||
**[[3pbm]] – PaADA + Zn + chloropurine | **[[3pbm]] – PaADA + Zn + chloropurine | ||
**[[6n9m]] – ADA + Zn + pentostatin – ''Salmonella typhimurium'' | **[[6n9m]] – ADA + Zn + pentostatin – ''Salmonella typhimurium'' | ||
**[[6n91]] – ADA + Zn + pentostatin – ''Vibrio cholerae'' | **[[6n91]] – ADA + Zn + pentostatin – ''Vibrio cholerae'' | ||
*Adenosine deaminase complex with protein | *Adenosine deaminase complex with protein | ||
**[[1w1i]] – bADA + Zn + dipeptidyl peptidase IV | **[[1w1i]] – bADA + Zn + dipeptidyl peptidase IV | ||
**[[2bgn]] – bADA + Zn + dipeptidyl peptidase IV + HIV1 TAT protein peptide | **[[2bgn]] – bADA + Zn + dipeptidyl peptidase IV + HIV1 TAT protein peptide | ||
*Double-stranded RNA-specific adenosine deaminase; domains – Zα 125-201; Zβ 294-366; 3rd RNA-binding 708-801; catalytic 299-729 | *Double-stranded RNA-specific adenosine deaminase; domains – Zα 125-201; Zβ 294-366; 3rd RNA-binding 708-801; catalytic 299-729 | ||
**[[1xmk]] – hADA Zα domain | **[[1xmk]] – hADA Zα domain | ||
**[[1qgp]] – hADA Zα domain - NMR | **[[1qgp]] – hADA Zα domain - NMR | ||
**[[2l54]], [[8gbc]], [[8gbd]] – hADA Zα domain (mutant) - NMR | **[[2l54]], [[8gbc]], [[8gbd]] – hADA Zα domain (mutant) - NMR | ||
**[[2acj]], [[1qbj]], [[2gxb]], [[3f21]], [[3f22]], [[3f23]], [[3irq]], [[3irr]], [[5zu1]], [[5zuo]], [[5zup]] – hADA Zα domain + DNA | **[[2acj]], [[1qbj]], [[2gxb]], [[3f21]], [[3f22]], [[3f23]], [[3irq]], [[3irr]], [[5zu1]], [[5zuo]], [[5zup]] – hADA Zα domain + DNA | ||
**[[7zj1]] – hADA 3rd RNA-binding domain | **[[7zj1]] – hADA 3rd RNA-binding domain | ||
**[[2mdr]] – hADA 3rd RNA-binding domain - NMR | **[[2mdr]] – hADA 3rd RNA-binding domain - NMR | ||
**[[7zlq]] – hADA 3rd RNA-binding domain + RNA | **[[7zlq]] – hADA 3rd RNA-binding domain + RNA | ||
**[[1zy7]] – hADA catalytic domain + inositol hexakisphosphate | **[[1zy7]] – hADA catalytic domain + inositol hexakisphosphate | ||
**[[6vff]] – hADA catalytic domain + inositol hexakisphosphate + RNA | **[[6vff]] – hADA catalytic domain + inositol hexakisphosphate + RNA | ||
**[[6d06]], [[5hp2]], [[5hp3]], [[5ed1]], [[5ed2]], [[7kfn]], [[8e0f]] – hADA catalytic domain + RNA | **[[6d06]], [[5hp2]], [[5hp3]], [[5ed1]], [[5ed2]], [[7kfn]], [[8e0f]] – hADA catalytic domain + RNA | ||
**[[8e4x]] – hADA catalytic domain (mutant) + RNA | **[[8e4x]] – hADA catalytic domain (mutant) + RNA | ||
**[[7c0j]] – hADA catalytic domain/histone H5 (mutant) + DNA | **[[7c0j]] – hADA catalytic domain/histone H5 (mutant) + DNA | ||
**[[2b7t]], [[2b7v]] – rADA 1st RNA-binding domain – rat | **[[2b7t]], [[2b7v]] – rADA 1st RNA-binding domain – rat | ||
**[[2l3c]], [[2l3j]] – rADA 1st RNA-binding domain + RNA – NMR | **[[2l3c]], [[2l3j]] – rADA 1st RNA-binding domain + RNA – NMR | ||
**[[2l2k]] – mADA residues 230-301 + RNA – NMR | **[[2l2k]] – mADA residues 230-301 + RNA – NMR | ||
**[[2ljh]] – ADA DRBM domain – ''Drosophila melanogaster'' – NMR | **[[2ljh]] – ADA DRBM domain – ''Drosophila melanogaster'' – NMR | ||
*tRNA-specific adenosine deaminase | *tRNA-specific adenosine deaminase | ||
**[[3dh1]] – hADA subunit ADAT2 | **[[3dh1]] – hADA subunit ADAT2 | ||
**[[7nz7]], [[7nz8]], [[7nz9]] – mADA subunits ADAT2/ADAT3 | **[[7nz7]], [[7nz8]], [[7nz9]] – mADA subunits ADAT2/ADAT3 | ||
**[[7bv5]] – ADA subunits TAD2, TAD3 + Zn - yeast | **[[7bv5]] – ADA subunits TAD2, TAD3 + Zn - yeast | ||
**[[7eey]] – ADA subunit TAD2 N-terminal – fission yeast | **[[7eey]] – ADA subunit TAD2 N-terminal – fission yeast | ||
**[[1z3a]], [[8e2r]], [[8e2s]]] – EcADA | **[[1z3a]], [[8e2r]], [[8e2s]]] – EcADA | ||
**[[8e2p]], [[8e2q]] – EcADA + DNA | **[[8e2p]], [[8e2q]] – EcADA + DNA | ||
**[[6vpc]] – EcADA in SPCAS9 DNA adenine base editor – Cryo EM | **[[6vpc]] – EcADA in SPCAS9 DNA adenine base editor – Cryo EM | ||
**[[2b3j]] – ADA + Zn + tRNA stem-loop – ''Staphylococcus aureus'' | **[[2b3j]] – ADA + Zn + tRNA stem-loop – ''Staphylococcus aureus'' | ||
**[[1wwr]] – ADA – ''Aquifex aeolicus'' | **[[1wwr]] – ADA – ''Aquifex aeolicus'' | ||
**[[2nx8]] – ADA (mutant) + Zn – ''Streptococcus pyogenes'' | **[[2nx8]] – ADA (mutant) + Zn – ''Streptococcus pyogenes'' | ||
**[[7cph]] – ADA + Zn – ''Bacillus subtilis''<br /> | **[[7cph]] – ADA + Zn – ''Bacillus subtilis''<br/> | ||
}} | }} | ||
[[Category: Topic Page]] | [[Category: Topic Page]] | ||