9zvm: Difference between revisions
From Proteopedia
Jump to navigationJump to search
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
==Dimer structure of Thlaspi arvense plastid biotin carboxylase== | |||
<StructureSection load='9zvm' size='340' side='right'caption='[[9zvm]], [[Resolution|resolution]] 2.85Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[9zvm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thlaspi_arvense Thlaspi arvense]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9ZVM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9ZVM FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 2.85Å</td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9zvm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9zvm OCA], [https://pdbe.org/9zvm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9zvm RCSB], [https://www.ebi.ac.uk/pdbsum/9zvm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9zvm ProSAT]</span></td></tr> | |||
</table> | |||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
Due to the interest in fatty acid synthesis by oilseed crops, we conducted structural studies of the biotin carboxylase (BC) subunit of the plastid acetyl-CoA carboxylase. Acetyl-CoA carboxylase catalyzes the first committed step in the fatty acid synthesis pathway and is highly regulated. Cryo-electron microscopy revealed that Thlaspi arvense (pennycress) BC forms a symmetric dimer and contains a subpopulation of a dimer-of-dimers. The domain of BC that closes over the catalytic cleft (the B-domain) appears to be dynamic, judging from the b-factors, normal mode analysis of BC structures, and its high susceptibility to acetylation. An increase in the BC concentration decreased the reactivity of the B-domain, however, suggesting structural hindrance. The partial protection of the B-domain was consistent with cross-links that formed between dimers of BC using a cross-linker cleavable in the mass spectrometer. Cross-links guided HADDOCK docking calculations suggesting a dimer of dimers of BC that is asymmetric, staggered, and tilted between dimers, with conservation in the interface. In contrast, a minimal population of a symmetric dimer of dimers with a small, non-conserved interface was observed by cryo-EM. Taken together, our structural models are the first for Brassicaceae family BC homologs and are the first from plants. These models suggest dimer interactions that might contribute to larger oligomers of BC and influence associations with other subunits of the heteromeric acetyl-CoA carboxylase. | |||
Oligomeric assemblies of plant biotin carboxylase revealed by cryo-EM and cross-linking.,Madison HJ, Dunn L, You Y, Lemes Jorge G, Pasa-Tolic L, Thelen JJ, Van Doren SR, Yokom AL Biochem J. 2026 Mar 25:BCJ20250372. doi: 10.1042/BCJ20250372. PMID:41879669<ref>PMID:41879669</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
[[Category: | </div> | ||
[[Category: | <div class="pdbe-citations 9zvm" style="background-color:#fffaf0;"></div> | ||
[[Category: Madison | == References == | ||
[[Category: Yokom | <references/> | ||
__TOC__ | |||
</StructureSection> | |||
[[Category: Large Structures]] | |||
[[Category: Thlaspi arvense]] | |||
[[Category: Madison HJ]] | |||
[[Category: Van Doren SR]] | |||
[[Category: Yokom AL]] | |||
