Proteopedia:Openfox/Solved: Difference between revisions
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issues fixed in New.Proteopedia |
issues fixed in New.Proteopedia |
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These were either solved during Openfox development or after release from Openfox (work by Protoepedia team). | These were either solved during Openfox development or after release from Openfox (work by Protoepedia team). | ||
They have been checked in New.Proteopedia | They have been checked in New.Proteopedia | ||
* (7) '''FIXED''' in New.Proteopedia --[[User:Angel Herraez|Angel Herraez]] 13:51, 10 May 2026 (IDT) <br><span style="color:gray">'''Tabs inside the SAT''' section have tiny text titles, smaller than the standard text in the page. Also, contrast is poor (blue text on pale blue background). I vote for larger font with better color contrast. --[[User:Angel Herraez|Angel_Herraez]] 11:25, 13 August 2025 (UTC)</span> | |||
* (14) This looks '''correct''' now in New.Protepedia --[[User:Angel Herraez|Angel Herraez]] 13:51, 10 May 2026 (IDT) <br><span style="color:gray">The '''Main Page''' needs to be formatted closer to the [https://bioinformatics.org/molvis/tmp/ppda-main-page/main-old.png old production version]. Here [https://bioinformatics.org/molvis/tmp/ppda-main-page/openfox-problems.png some problems are marked]. Here is a [https://bioinformatics.org/molvis/tmp/ppda-main-page/openfox-better.png better version in openfox] (comments were inserted) but still some problems are marked.</span> | |||
* (17) '''FIXED''' in NewProteopedia --[[User:Angel Herraez|Angel Herraez]] 17:41, 12 May 2026 (IDT) <br><span style="color:gray">Applet '''popup window''' not working for some scenes -- [[User:Jaime Prilusky|Jaime Prilusky]] 08:33, 21 December 2025 (UTC) On page [[User:Jaime_Prilusky/Test/Simple]], popup for scene "cylinders" works fine while popup for scene "1acj with Tacrine" fails.</span> | |||
: <span style="color:gray">Both are working correctly for me; Firefox Win11 --[[User:Angel Herraez|Angel Herraez]] 19:05, 25 December 2025 (UTC) <span style="color:green;">Can somebody else confirm?</span> </span> | |||
* (19) '''FIXED''' in New.Proteopedia --[[User:Angel Herraez|Angel Herraez]] 20:53, 13 May 2026 (IDT)<br><span style="color:gray">"Search Proteopedia" (upper right corner of page in openfox) defaults only to the Main namespace. This default will cause most user searches to fail because they won't notice and/or won't understand about '''namespaces'''. The default search should include all namespaces (but not, in my opinion, talk namespaces). [[User:Eric Martz|Eric Martz]] 16:10, 22 December 2025 (UTC)</span> | |||
* (25) '''FIXED''' in New.Proteopedia --[[User:Angel Herraez|Angel Herraez]] 20:47, 13 May 2026 (IDT) <br><span style="color:gray">'''Sequence Tool help:''' In seeded pages, there is a [show sequence] link (green background) at top left hand side. Next to it there is a question mark icon. Clicking on it should open a pop-up window, but nothing happens. The target page is index.php?title=Seqtool&printable=yes</span> | |||
:: <span style="color:gray">The link code is <nowiki><i id="seqtoolInfo" class="fas fa-question-circle" onclick="seqtoolInfo();" style="display: inline-block;"></i></nowiki></span> | |||
:: <span style="color:gray">The action gives an error in the browser JS console saying <nowiki>Uncaught TypeError: (intermediate value).seqtoolInfo is not a function</nowiki></span> | |||
* (26) '''FIXED''' in NewProteopedia, even though might not be a universal solution. <br><span style="color:gray">Seeded pages like [https://proteopedia.openfox.io/w/2ghi this one] that have evolutionary conservation data (ConSurf) include a toggle, a checkbox which right now is fully adjacent to previous and following text; space needs to be added on both sides:</span> | |||
:: <code>Check☐to colour</code> ==> <code>Check ☐ to colour</code> | |||
* (27) '''FIXED''' in New.Peoteopedia --[[User:Angel Herraez|Angel Herraez]] 13:51, 10 May 2026 (IDT) <br><span style="color:gray">'''Main page''': The blue "i" icon (for info) overlaid at bottom-right on each of the 3 large images is displayed duplicated vertically. It seems to be CSS background-image that needs "no-repeat".</span> | |||
* (28) '''FIXED''' in New.Proteopedia --[[User:Angel Herraez|Angel Herraez]] ([[User talk:Angel Herraez|talk]]) 21:03, 13 May 2026 (IDT)<br><span style="color:gray">The two checkboxes "[ ] Include only Seeded (Automatic) pages - [ ] only Human created pages" '''are missing''' when searching on the search slot on the top-right corner. They only appear after searching on the 'Search results' page. [[User:Jaime Prilusky|Jaime Prilusky]] 05:16, 30 December 2025 (UTC) </span> | |||
* (24) '''FIXED''' in NewProteopedia --[[User:Angel Herraez|Angel Herraez]] 20:58, 13 May 2026 (IDT)<br><span style="color:gray">In all my testing so far, I was using the default '''JSmol version''' 14.31.8 which is very old and obsolete. It did not occur to me to use Preferences, Appearance, Advanced JSmol version until now. I strongly recommend that the current version of JSmol 16.3.41 (or 16.3.33 as is the default in old public Proteopedia) be the default in Openfox. {{Yelspan|Otherwise, much testing will have to be redone.}} [[User:Eric Martz|Eric Martz]] 00:08, 27 December 2025 (UTC) </span> | |||
* (30) '''FIXED''' in New.Proteopedia --[[User:Angel Herraez|Angel Herraez]] ([[User talk:Angel Herraez|talk]]) 21:03, 13 May 2026 (IDT)<br><span style="color:gray">When a file has multiple structures (like [https://proteopedia.openfox.io/w/1o0l here]), a toggle is displayed under the JSmol panel to play or stop animation. When the pop-up is opened (large window with a duplicate of the structure), the animation toggle icon (right-pointing triangle within a circle) is very large; its size should be adjusted as it is in the calling page.</span> | |||
: <span style="color:gray"><code>#animCont svg { vertical-align:bottom; width:1.3em; height:1.3em; margin-bottom:0.1em; }</code> </span> | |||
: <span style="color:gray">Maybe this happens because the pop-up page, JSmolPopup.htm, is not calling Proteopedia.css, or it has the wrong version of this file. </span> | |||
* (31) '''FIXED''' in New.Protepedia --[[User:Angel Herraez|Angel Herraez]] 21:07, 10 May 2026 (IDT) <br><span style="color:gray">The JSmol pop-up menu in the SAT is not properly CSS formatted. Specifically, triangular arrowheads should be flushed right for each entry that has sub-menus, not left and below the entry. Compare with menu for JSmol in the page.</span> | |||
