21nh: Difference between revisions

Line 1:

~~'''Unreleased structure'''~~

~~The entry~~ 21nh is ~~ON HOLD until Paper Publication~~

==structure of NMI NID domain dimer form==

~~Authors~~: ~~Sun~~, T.L., ~~Liu~~, Y.F.

== Structural highlights ==

<table><tr><td colspan='2'>[[21nh]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=21NH OCA]. For a guided tour on the structure components use [https://proteopedia.org/fgij/fg.htm?mol=21NH FirstGlance].

~~Description~~: ~~structure~~ of NMI ~~NID domain dimer form~~

</td></tr><tr id='method'><td class="sblockLbl">[[Empirical_models|Method:]]</td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6Å</td></tr>

[[Category: ~~Unreleased~~ Structures]]

<tr id='ligand'><td class="sblockLbl">[[Ligand|Ligands:]]</td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>

[[Category: ~~Sun, T.L~~]]

<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[https://proteopedia.org/fgij/fg.htm?mol=21nh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=21nh OCA], [https://pdbe.org/21nh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=21nh RCSB], [https://www.ebi.ac.uk/pdbsum/21nh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=21nh ProSAT]</td></tr>

[[Category: ~~Liu, Y.F~~]]

</table>

== Function ==

[https://www.uniprot.org/uniprot/NMI_HUMAN NMI_HUMAN] Acts as a signaling pathway regulator involved in innate immune system response (PubMed:26342464, PubMed:29038465, PubMed:29350881, PubMed:9989503). In response to interleukin 2/IL2 and interferon IFN-gamma/IFNG, interacts with signal transducer and activator of transcription/STAT which activate the transcription of downstream genes involved in a multitude of signals for development and homeostasis (PubMed:29377960, PubMed:9989503). Enhances the recruitment of CBP/p300 coactivators to STAT1 and STAT5, resulting in increased STAT1- and STAT5-dependent transcription (PubMed:9989503). In response to interferon IFN-alpha, associates in a complex with signaling pathway regulator IFI35 to regulate immune response; the complex formation prevents proteasome-mediated degradation of IFI35 (PubMed:10779520, PubMed:10950963). In complex with IFI35, inhibits virus-triggered type I IFN-beta production when ubiquitinated by ubiquitin-protein ligase TRIM21 (PubMed:26342464). In complex with IFI35, negatively regulates nuclear factor NF-kappa-B signaling by inhibiting the nuclear translocation, activation and transcription of NF-kappa-B subunit p65/RELA, resulting in the inhibition of endothelial cell proliferation, migration and re-endothelialization of injured arteries (PubMed:29350881). Negatively regulates virus-triggered type I interferon/IFN production by inducing proteosome-dependent degradation of IRF7, a transcriptional regulator of type I IFN, thereby interfering with cellular antiviral responses (By similarity). Beside its role as an intracellular signaling pathway regulator, also functions extracellularly as damage-associated molecular patterns (DAMPs) to promote inflammation, when actively released by macrophage to the extracellular space during cell injury or pathogen invasion (PubMed:29038465). Macrophage-secreted NMI activates NF-kappa-B signaling in adjacent macrophages through Toll-like receptor 4/TLR4 binding and activation, thereby inducing NF-kappa-B translocation from the cytoplasm into the nucleus which promotes the release of pro-inflammatory cytokines (PubMed:29038465).[UniProtKB:O35309]<ref>PMID:10779520</ref> <ref>PMID:10950963</ref> <ref>PMID:26342464</ref> <ref>PMID:29038465</ref> <ref>PMID:29350881</ref> <ref>PMID:9989503</ref>

== References ==

__TOC__

</StructureSection>

[[Category: Homo sapiens]]

[[Category: Large Structures]]

[[Category: Liu YF]]

[[Category: Sun TL]]

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@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
-The entry 21nh is ON HOLD  until Paper Publication
+==structure of NMI NID domain dimer form==
+<StructureSection load='21nh' size='340' side='right'caption='[[21nh]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-Authors: Sun, T.L., Liu, Y.F.
+== Structural highlights ==
+<table><tr><td colspan='2'>[[21nh]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=21NH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=21NH FirstGlance]. <br>
-Description: structure of NMI NID domain dimer form
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-[[Category: Unreleased Structures]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-[[Category: Sun, T.L]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=21nh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=21nh OCA], [https://pdbe.org/21nh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=21nh RCSB], [https://www.ebi.ac.uk/pdbsum/21nh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=21nh ProSAT]</span></td></tr>
-[[Category: Liu, Y.F]]
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/NMI_HUMAN NMI_HUMAN] Acts as a signaling pathway regulator involved in innate immune system response (PubMed:26342464, PubMed:29038465, PubMed:29350881, PubMed:9989503). In response to interleukin 2/IL2 and interferon IFN-gamma/IFNG, interacts with signal transducer and activator of transcription/STAT which activate the transcription of downstream genes involved in a multitude of signals for development and homeostasis (PubMed:29377960, PubMed:9989503). Enhances the recruitment of CBP/p300 coactivators to STAT1 and STAT5, resulting in increased STAT1- and STAT5-dependent transcription (PubMed:9989503). In response to interferon IFN-alpha, associates in a complex with signaling pathway regulator IFI35 to regulate immune response; the complex formation prevents proteasome-mediated degradation of IFI35 (PubMed:10779520, PubMed:10950963). In complex with IFI35, inhibits virus-triggered type I IFN-beta production when ubiquitinated by ubiquitin-protein ligase TRIM21 (PubMed:26342464). In complex with IFI35, negatively regulates nuclear factor NF-kappa-B signaling by inhibiting the nuclear translocation, activation and transcription of NF-kappa-B subunit p65/RELA, resulting in the inhibition of endothelial cell proliferation, migration and re-endothelialization of injured arteries (PubMed:29350881). Negatively regulates virus-triggered type I interferon/IFN production by inducing proteosome-dependent degradation of IRF7, a transcriptional regulator of type I IFN, thereby interfering with cellular antiviral responses (By similarity). Beside its role as an intracellular signaling pathway regulator, also functions extracellularly as damage-associated molecular patterns (DAMPs) to promote inflammation, when actively released by macrophage to the extracellular space during cell injury or pathogen invasion (PubMed:29038465). Macrophage-secreted NMI activates NF-kappa-B signaling in adjacent macrophages through Toll-like receptor 4/TLR4 binding and activation, thereby inducing NF-kappa-B translocation from the cytoplasm into the nucleus which promotes the release of pro-inflammatory cytokines (PubMed:29038465).[UniProtKB:O35309]<ref>PMID:10779520</ref> <ref>PMID:10950963</ref> <ref>PMID:26342464</ref> <ref>PMID:29038465</ref> <ref>PMID:29350881</ref> <ref>PMID:9989503</ref>
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Homo sapiens]]
+[[Category: Large Structures]]
+[[Category: Liu YF]]
+[[Category: Sun TL]]