Porin 3D structures: Difference between revisions

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Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
{{#tree:id=OrganizedByTopic|openlevels=0|
{{#tree:id=OrganizedByTopic|openlevels=0|
*OmpA
*OmpA
**[[3nb3]] – EcOmpA + EcOmpC – ''Escherichia coli'' – EM<br />
**[[3nb3]] – EcOmpA + EcOmpC – ''Escherichia coli'' – EM<br />
**[[1bxw]], [[1qjp]] – EcOmpA transmembrane domain (mutant)<br />
**[[1bxw]], [[1qjp]] – EcOmpA transmembrane domain 22-191 (mutant)<br />
**[[2jmm]] – EcOmpA transmembrane domain - NMR<br />
**[[2jmm]] – EcOmpA transmembrane domain - NMR<br />
**[[1g90]], [[2ge4]] – EcOmpA transmembrane domain (mutant) - NMR<br />
**[[1g90]], [[2ge4]] – EcOmpA transmembrane domain (mutant) - NMR<br />
**[[9fzc]] – EcOmpA transmembrane domain + nanobody<br />
**[[9fzd]] – EcOmpA 51-224 + nanobody<br />
**[[2kgw]] – MtOmpA C terminal residues 198-326– ''Mycobacterium tuberculosis'' – NMR<br />
**[[2kgw]] – MtOmpA C terminal residues 198-326– ''Mycobacterium tuberculosis'' – NMR<br />
**[[2ksm]] – MtOmpA BON domain residues 73-203 – NMR<br />
**[[2ksm]] – MtOmpA BON domain residues 73-203 – NMR<br />
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**[[4erh]] – SeOmpA residues 205-349 – ''Salmonella enterica''<br />
**[[4erh]] – SeOmpA residues 205-349 – ''Salmonella enterica''<br />
**[[5jir]] – OmpA-OmpF – ''Treponema pallidum''<br />
**[[5jir]] – OmpA-OmpF – ''Treponema pallidum''<br />
*OmpB
 
**[[3vzt]] – NmOmpB – ''Neisseria meningitides''<br />
**[[7de8]] – NmOmpB (mutant) <br />
**[[3a2s]], [[3vzw]] – NmOmpB+sugars<br />
**[[3vzu]] - NmOmpB+AMPPNP<br />
**[[4gey]], [[4gf4]] – OmpB – ''Pseudomonas putida''<br />
*OmpC
*OmpC
**[[2xe5]], [[2xe1]], [[2xe2]], [[2xe3]], [[2j1n]], [[2xg6]] – EcOmpC <br />
**[[2j1n]], [[2xe1]], [[2xe2]], [[2xe3]], [[2xe5]], [[2xg6]] – EcOmpC <br />
**[[7jz3]] - EcOmpC – Cryo EM<br />
**[[7jz3]] - EcOmpC – Cryo EM<br />
**[[2zle]] - EcOmpC + protease DO – EM<br />
**[[2zle]] - EcOmpC + protease DO – Cryo EM<br />
**[[4a8d]] - EcOmpC + DEGP – EM<br />
**[[4a8d]] - EcOmpC + DEGP – Cryo EM<br />
**[[8i8r]] - EcOmpC + MlaA – Cryo EM<br />
**[[8i8x]] - EcOmpC + MlaA + MlaC – Cryo EM<br />
**[[9wcb]] - EcOmpC + tail fiber – Cryo EM<br />
**[[2j4u]] – EcOmpC+lactotransferrin fragment<br />
**[[2j4u]] – EcOmpC+lactotransferrin fragment<br />
**[[3upg]], [[3uu2]] – SeOmpC <br />
**[[3upg]], [[3uu2]] – SeOmpC <br />
**[[5fvn]] – EncOmpC – ''Enterobacter cloacae''<br />
**[[5fvn]] – EncOmpC – ''Enterobacter cloacae''<br />
*OmpF
*OmpF
**[[3k19]], [[3k1b]], [[2zfg]], [[2omf]], [[1opf]], [[3poq]], [[3pou]], [[3pox]], [[4jfb]], [[4lse]], [[4lsf]], [[4lsh]], [[4lsi]], [[4d5u]], [[7fdy]], [[8c7l]] – EcOmpF<br />
**[[1opf]], [[2omf]], [[2zfg]], [[3k19]], [[3k1b]], [[3poq]], [[3pou]], [[3pox]], [[4d5u]], [[4jfb]], [[4lse]], [[4lsf]], [[4lsh]], [[4lsi]], [[7fdy]], [[8c7l]], [[9j9l]], [[9j9m]], [[9j9n]], [[9j9o]], [[9j9p]] – EcOmpF<br />
**[[6wtz]] – EcOmpF – Cryo EM<br />
**[[6wtz]] – EcOmpF – Cryo EM<br />
**[[1hxt]], [[1hxu]], [[1hxx]], [[1bt9]], [[1gfm]], [[1gfn]], [[1gfo]], [[1gfp]], [[1gfq]], [[1mpf]] – EcOmpF (mutant) <br />
**[[1bt9]], [[1gfm]], [[1gfn]], [[1gfo]], [[1gfp]], [[1gfq]], [[1hxt]], [[1hxu]], [[1hxx]], [[1mpf]] – EcOmpF (mutant) <br />
**[[5nur]], [[5nuo]] – EcOmpF + ABC transprter permease<br />
**[[5nuo]], [[5nur]] – EcOmpF + ABC transprter permease<br />
**[[5nuq]] – EcOmpF + MLAA<br />
**[[5nuq]] – EcOmpF + MLAA<br />
**[[2zld]] – EcOmpF+colicin E3<br />
**[[2zld]] – EcOmpF+colicin E3<br />
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**[[6ene]] – EncOmpF<br />
**[[6ene]] – EncOmpF<br />
*OmpG
*OmpG
**[[2iwv]], [[2iww]], [[2f1c]], [[4ctd]], [[7q5c]] – EcOmpG<br />
**[[2f1c]], [[2iwv]], [[2iww]], [[4ctd]], [[7q5c]] – EcOmpG<br />
**[[2x9k]], [[2wvp]] - EcOmpG (mutant) <br />
**[[2wvp]], [[2x9k]] - EcOmpG (mutant) <br />
**[[2jqy]], [[6oqh]] – EcOmpG - NMR<br />
**[[2jqy]], [[6oqh]] – EcOmpG - NMR<br />
*OmpK
*OmpK
**[[1osm]], [[6rck]], [[6rcp]], [[6rd3]] – KpOmpK36 <br />
**[[1osm]], [[6rck]], [[6rcp]], [[6rd3]], [[8pyz]], [[8quq]], [[8qur]], [[8qvs]], [[8qvv]] – KpOmpK36 <br />
**[[6rcp]] – KpOmpK36 (mutant)<br />
**[[6rcp]] – KpOmpK36 (mutant)<br />
**[[5nup]] – KpOmpK36 + ABC transporter permease<br />
**[[5nup]] – KpOmpK36 + ABC transporter permease<br />
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**[[5ldt]] – CjOmpM – ''Campylobacter jejuni'' <br />
**[[5ldt]] – CjOmpM – ''Campylobacter jejuni'' <br />
**[[5ldv]] – CjOmpM (mutant)<br />
**[[5ldv]] – CjOmpM (mutant)<br />
**[[8bym]], [[8bys]], [[8byt]] – VpOmpM – Veillonella parvula – Cryo EM<br />
**[[8bz2]] – VpOmpM SLH domain 22-108 <br />
*OmpP
**[[9oq7]] – CmOmpP – Chlamydia muridarum – Cryo EM<br />
**[[9oqd]] – CmOmpP + antibody – Cryo EM<br />
*OmpR
*OmpR
**[[1opc]] - EcOmpR C terminal<br />
**[[1opc]] - EcOmpR C terminal<br />
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**[[5oyk]], [[6ehd]], [[6ehf]] - VcOmpT – ''Vibrio cholerae''<br />
**[[5oyk]], [[6ehd]], [[6ehf]] - VcOmpT – ''Vibrio cholerae''<br />
*OmpU
*OmpU
**[[6ehb]], [[5onu]] - VcOmpU <br />
**[[5onu]], [[6ehb]] - VcOmpU <br />
**[[6ehc]] - VcOmpU (mutant)<br />
**[[6ehc]] - VcOmpU (mutant)<br />
*OmpW
**[[8qxp]] - KpOmpW <br />
*Omp32
*Omp32
**[[2fgr]] - DaOmp32 – ''Delftia acidovorans''<br />
**[[2fgr]] - DaOmp32 – ''Delftia acidovorans''<br />
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**[[5o78]] – Omp35 – ''Enterobacter aerogenes''<br />
**[[5o78]] – Omp35 – ''Enterobacter aerogenes''<br />
*OprB
*OprB
**[[4gf4]], [[4gey]] – PaOprB – ''Pseudomonas aeruginosa''<br />
 
**[[4gey]], [[4gf4]] – PpOprB – ''Pseudomonas putida''<br />
*OprD
*OprD
**[[2odj]], [[3sy7]], [[4foz]] – PaOprD<br />
**[[2odj]], [[3sy7]], [[4foz]] – PaOprD – ''Pseudomonas aeruginosa''<br />
*OprE
*OprE
**[[4frx]] – PaOprE<br />
**[[4frx]] – PaOprE<br />
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**[[3t0s]] - PaOprL<br />
**[[3t0s]] - PaOprL<br />
*OprM
*OprM
**[[3d5k]], [[1wp1]], [[4y1k]] - PaOprM<br />
**[[1wp1]], [[3d5k]], [[4y1k]] - PaOprM<br />
*OprO
*OprO
**[[4rjw]] - PaOprO<br />
**[[4rjw]] - PaOprO<br />
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**[[2v9u]] – MsOmp rim domain – ''Mycobacteria smegmatis''<br />
**[[2v9u]] – MsOmp rim domain – ''Mycobacteria smegmatis''<br />
**[[1uun]] – MsOmp (mutant) <br />
**[[1uun]] – MsOmp (mutant) <br />
**[[2prn]], [[1bh3]], [[3prn]], [[5prn]], [[6prn]], [[7prn]], [[8prn]] – RbOmp (mutant) - ''Rhodopseudomonas blastica''<br />
**[[1bh3]], [[2prn]], [[3prn]], [[5prn]], [[6prn]], [[7prn]], [[8prn]] – RbOmp (mutant) - ''Rhodopseudomonas blastica''<br />
**[[1prn]] – RbOmp<br />
**[[1prn]] – RbOmp<br />
**[[1h6s]] – RbOmp+inserted sequence<br />
**[[1h6s]] – RbOmp+inserted sequence<br />
**[[2por]], [[3por]] – Omp – ''Rhodobacter capsulatus''<br />
**[[2por]], [[3por]] – Omp – ''Rhodobacter capsulatus''<br />
**[[4aui]] – Omp – ''Neisseria gonorrheae''<br />
**[[8wv0]] – BpOmp 21-374 – Burkholderia pseudomallei<br />
**[[8jto]] – BpOmp + drug<br />
**[[4fqe]] – DdOmp KDGM – ''Dickeya dadantii''<br />
**[[4fqe]] – DdOmp KDGM – ''Dickeya dadantii''<br />
**[[4pr7]] – DdOmp KDGM + oligogalactouronate<br />
**[[4pr7]] – DdOmp KDGM + oligogalactouronate<br />
**[[4d64]], [[5nxr]] – PsOmp 1 – ''Providencia stuartii''<br />
**[[4d64]], [[5nxr]] – PsOmp 1 – ''Providencia stuartii''<br />
**[[5nxn]] – PsOmp 1 (mutant)<br />
**[[5nxn]] – PsOmp 1 (mutant)<br />
**[[5n9i]], [[5n9h]] – PsOmp 1 dimerization domain<br />
**[[5n9h]], [[5n9i]] – PsOmp 1 dimerization domain<br />
**[[5nxu]] – PsOmp 1 + maltose<br />
**[[5nxu]] – PsOmp 1 + maltose<br />
**[[4d65]] – PsOmp 2<br />
**[[4d65]] – PsOmp 2<br />
**[[4fuv]], [[5dl7]] – AbOmp<br />
**[[4fuv]], [[5dl7]] – AbOmp<br />
**[[8xua]] – VhOmp – ''Vibrio harveyi'' <br />
*PorB or anion-specific porin
**[[2vqg]], [[2vqh]], [[2vqk]], [[2vql]], [[3vy8]], [[3vy9]] – PorB – Corynebacterium glutamicum<br />
**[[3vzt]], [[3wi4]], [[3wi5]] – NmPorB – ''Neisseria meningitides''<br />
**[[7de8]] – NmPorB (mutant) <br />
**[[3a2s]], [[3vzw]] – NmPorB+sugars<br />
**[[3vzu]] - NmPorB+AMPPNP<br />
**[[4aui]] – PorB – ''Neisseria gonorrheae''<br />
*Sugar-specific porin
*Sugar-specific porin
**[[1a0s]] – StOmp<br />
**[[1a0s]] – StOmp<br />
**[[1oh2]], [[1a0t]] – StOmp+sucrose<br />
**[[1a0t]], [[1oh2]] – StOmp+sucrose<br />
*Maltoporin  
*Maltoporin  
**[[1mal]] – EcLamB<br />
**[[1mal]] – EcLamB<br />
**[[8b7v]] – EcLamB – Cryo EM<br />
**[[8b7v]] – EcLamB – Cryo EM<br />
**[[1af6]], [[1mpq]], [[1mpm]], [[1mpn]], [[1mpo]] – EcLamB+sugars<br />
**[[1af6]], [[1mpq]], [[1mpm]], [[1mpn]], [[1mpo]] – EcLamB+sugars<br />
**[[2mpr]], [[1mpr]] – StLamB<br />
**[[1mpr]], [[2mpr]] – StLamB<br />
*Chitoporin
*Chitoporin
**[[7vu2]], [[7vu3]] – SmChitp + chitohexaose – ''Serratia marcescens''<br />
**[[7vu2]], [[7vu3]] – SmChitp + chitohexaose – ''Serratia marcescens''<br />
**[[7vtz]], [[7vu0]], [[7vu1]] – EcChitp + chitohexaose <br />
**[[7vtz]], [[7vu0]], [[7vu1]] – EcChitp + chitohexaose <br />
**[[5ndp]], [[5mdq]], [[5mds]] – VhChitp – ''Vibrio harveyi'' <br />
**[[5mdq]], [[5mds]], [[5ndp]] – VhChitp <br />
**[[5mdo]], [[5mdr]], [[7eqm]], [[7eqr]] – VhChitp + chitohexaose <br />
**[[5mdo]], [[5mdr]], [[7eqm]], [[7eqr]] – VhChitp + chitohexaose <br />
**[[7x5q]] – VhChitp + chitohexaose + peptide<br />
**[[7x5q]] – VhChitp + chitohexaose + peptide<br />
Retrieved from "https://proteopedia.org/Porin_3D_structures"