30ga: Difference between revisions
From Proteopedia
Jump to navigationJump to search
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
==Cryo-EM structure of the PseCascade-TniQ-TnsC-TnsAB holocomplex== | |||
<StructureSection load='30ga' size='340' side='right'caption='[[30ga]], [[Resolution|resolution]] 3.20Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[30ga]] is a 35 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12] and [https://en.wikipedia.org/wiki/Pseudoalteromonas_sp._S983 Pseudoalteromonas sp. S983]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=30GA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=30GA FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.2Å</td></tr> | |||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=30ga FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=30ga OCA], [https://pdbe.org/30ga PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=30ga RCSB], [https://www.ebi.ac.uk/pdbsum/30ga PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=30ga ProSAT]</span></td></tr> | |||
</table> | |||
== Function == | |||
[https://www.uniprot.org/uniprot/A0ABF7PQB9_9GAMM A0ABF7PQB9_9GAMM] | |||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
CRISPR-associated transposases (CASTs) achieve site-specific DNA integration by coupling the RNA-guided targeting action of a nuclease-deficient CRISPR-Cas system with the assembly of a Tn7-like transpososome complex (1,2) . Understanding the detailed mechanisms of this elaborate process is paramount to engineering CAST systems into programmable genetic tools (3-6) . The type I-F Pseudoalteromonas CAST ( Pse CAST) displays the highest activity in mammalian cells to date (7) and has been the subject of extensive directed evolution (8) , but efforts to rationally engineer further improvements have been hampered by critical gaps in our understanding of transpososome assembly and activation (9) . Here we use cryo-EM structural analysis, validated by DNA transposition assays, to visualize the Pse CAST system in a series of functional states that define the stepwise mechanism of RNA-guided DNA integration. The structure of a target DNA-bound Cascade-TniQ-TnsC complex reveals that conformational changes induced by R-loop formation are coupled to target DNA stabilization and TnsC heptamerization, which in turn recruits the TnsAB transposase via conserved interactions with its C-terminal tail. Finally, the structure of the 1.2 MDa Pse CAST transpososome holocomplex reveals specific TnsC-TnsB and TnsB-target DNA interactions that drive allosteric remodelling of the TnsB catalytic site to activate donor DNA integration. Together, these findings establish a unified structural and mechanistic blueprint for RNA-guided DNA integration and lay the foundation for engineering next-generation DNA insertion systems for genome editing applications. | |||
Structural basis of RNA-guided DNA integration by type I CRISPR-associated transposases.,Finocchio G, Oberli S, Lampe G, Schmitz M, Sternberg SH, Jinek M bioRxiv [Preprint]. 2026 May 18:2026.05.18.725949. doi: , 10.64898/2026.05.18.725949. PMID:42239233<ref>PMID:42239233</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
[[Category: | </div> | ||
<div class="pdbe-citations 30ga" style="background-color:#fffaf0;"></div> | |||
== References == | |||
<references/> | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Escherichia coli K-12]] | |||
[[Category: Large Structures]] | |||
[[Category: Pseudoalteromonas sp. S983]] | |||
[[Category: Finocchio G]] | |||
[[Category: Jinek M]] | |||
[[Category: Oberli S]] | |||
[[Category: Schmitz M]] | |||
Latest revision as of 07:04, 17 June 2026
Cryo-EM structure of the PseCascade-TniQ-TnsC-TnsAB holocomplex
| ||||||||||||