9rfp: Difference between revisions

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'''Unreleased structure'''


The entry 9rfp is ON HOLD  until Paper Publication
==Peptidedeformylase XisD in complex with formiate==
 
<StructureSection load='9rfp' size='340' side='right'caption='[[9rfp]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
Authors: Rill, A., Westphalen, M., Lamberioux, M., Chekaiban, J., Mazel, D., Groll, M., Huber, E.M., Bode, H.B.
== Structural highlights ==
 
<table><tr><td colspan='2'>[[9rfp]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Xenorhabdus_hominickii Xenorhabdus hominickii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9RFP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9RFP FirstGlance]. <br>
Description: Peptidedeformylase XisD in complex with formiate
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
[[Category: Unreleased Structures]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
[[Category: Rill, A]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9rfp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9rfp OCA], [https://pdbe.org/9rfp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9rfp RCSB], [https://www.ebi.ac.uk/pdbsum/9rfp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9rfp ProSAT]</span></td></tr>
[[Category: Mazel, D]]
</table>
[[Category: Bode, H.B]]
== Function ==
[[Category: Lamberioux, M]]
[https://www.uniprot.org/uniprot/A0A1V0M4F3_XENHO A0A1V0M4F3_XENHO] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.[HAMAP-Rule:MF_00163]
[[Category: Westphalen, M]]
__TOC__
[[Category: Groll, M]]
</StructureSection>
[[Category: Chekaiban, J]]
[[Category: Large Structures]]
[[Category: Huber, E.M]]
[[Category: Xenorhabdus hominickii]]
[[Category: Bode HB]]
[[Category: Chekaiban J]]
[[Category: Groll M]]
[[Category: Huber EM]]
[[Category: Lamberioux M]]
[[Category: Mazel D]]
[[Category: Rill A]]
[[Category: Westphalen M]]
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