9ozo: Difference between revisions

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<table><tr><td colspan='2'>[[9ozo]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Sicarius_terrosus Sicarius terrosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9OZO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9OZO FirstGlance]. <br>
<table><tr><td colspan='2'>[[9ozo]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Sicarius_terrosus Sicarius terrosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9OZO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9OZO FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A1A43:2-azanylethyl+[(~{E},2~{S},3~{R})-2-(dodecanoylamino)-3-oxidanyl-heptadec-4-enyl]+hydrogen+phosphate'>A1A43</scene>, <scene name='pdbligand=A1A44:N-{(2S,4R,5S)-2-hydroxy-2-oxo-4-[(1E)-tetradec-1-en-1-yl]-1,3,2lambda~5~-dioxaphosphinan-5-yl}dodecanamide'>A1A44</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A1A43:2-aminoethyl+(2S,3R,4E)-2-dodecanamido-3-hydroxyheptadec-4-en-1-yl+hydrogen+(S)-phosphate'>A1A43</scene>, <scene name='pdbligand=A1A44:~{N}-[(4~{R},5~{S})-2-oxidanyl-2-oxidanylidene-4-[(~{E})-tetradec-1-enyl]-1,3,2$l^{5}-dioxaphosphinan-5-yl]dodecanamide'>A1A44</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9ozo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9ozo OCA], [https://pdbe.org/9ozo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9ozo RCSB], [https://www.ebi.ac.uk/pdbsum/9ozo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9ozo ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9ozo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9ozo OCA], [https://pdbe.org/9ozo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9ozo RCSB], [https://www.ebi.ac.uk/pdbsum/9ozo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9ozo ProSAT]</span></td></tr>
</table>
</table>

Latest revision as of 05:54, 24 June 2026

Structure of phospholipase D BetaIB1i from Sicarius terrosus venom, H47N mutant bound to product and substrate sphingolipids at 2.2 A resolution from a 2-day old crystal

9ozo, resolution 2.20Å

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