4dcx: Difference between revisions

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==X-ray structure of NikA in complex with Fe(1R,2R)-N,N'-Bis(2-pyridylmethyl)-N,N'-dicarboxymethyl-1,2-cyclohexanediamine==
==X-ray structure of NikA in complex with Fe(1R,2R)-N,N'-Bis(2-pyridylmethyl)-N,N'-dicarboxymethyl-1,2-cyclohexanediamine==
<StructureSection load='4dcx' size='340' side='right' caption='[[4dcx]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
<StructureSection load='4dcx' size='340' side='right'caption='[[4dcx]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[4dcx]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DCX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4DCX FirstGlance]. <br>
<table><tr><td colspan='2'>[[4dcx]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DCX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4DCX FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=L2D:{2,2-[(1R,2R)-CYCLOHEXANE-1,2-DIYLBIS{[(PYRIDIN-2-YL-KAPPAN)METHYL]IMINO-KAPPAN}]DIACETATO-KAPPAO(2-)}IRON'>L2D</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1zlq|1zlq]], [[4dcy|4dcy]]</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=L2D:{2,2-[(1R,2R)-CYCLOHEXANE-1,2-DIYLBIS{[(PYRIDIN-2-YL-KAPPAN)METHYL]IMINO-KAPPAN}]DIACETATO-KAPPAO(2-)}IRON'>L2D</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">b3476, JW3441, nikA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4dcx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dcx OCA], [https://pdbe.org/4dcx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4dcx RCSB], [https://www.ebi.ac.uk/pdbsum/4dcx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4dcx ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4dcx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dcx OCA], [http://pdbe.org/4dcx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4dcx RCSB], [http://www.ebi.ac.uk/pdbsum/4dcx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4dcx ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/NIKA_ECOLI NIKA_ECOLI]] Involved in a nickel transport system, probably represents the nickel binder.  
[https://www.uniprot.org/uniprot/NIKA_ECOLI NIKA_ECOLI] Involved in a nickel transport system, probably represents the nickel binder.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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</div>
</div>
<div class="pdbe-citations 4dcx" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 4dcx" style="background-color:#fffaf0;"></div>
==See Also==
*[[ABC transporter 3D structures|ABC transporter 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Ecoli]]
[[Category: Escherichia coli K-12]]
[[Category: Amara, P]]
[[Category: Large Structures]]
[[Category: Cavazza, C]]
[[Category: Amara P]]
[[Category: Cherrier, M V]]
[[Category: Cavazza C]]
[[Category: Fontecilla-Camps, J C]]
[[Category: Cherrier MV]]
[[Category: Girgenti, E]]
[[Category: Fontecilla-Camps JC]]
[[Category: Iannello, M]]
[[Category: Girgenti E]]
[[Category: Marchi-Delapierre, C]]
[[Category: Iannello M]]
[[Category: Menage, S]]
[[Category: Marchi-Delapierre C]]
[[Category: Metal transport]]
[[Category: Menage S]]
[[Category: Protein-bound iron complex]]
[[Category: Transport protein]]