9sil: Difference between revisions

Line 1:

~~'''Unreleased structure'''~~

~~The entry~~ 9sil is ~~ON HOLD until Paper Publication~~

==Phage epsilon15 tailspike gp20 esterase domain with a fragment of the Salmonella Anatum O-antigen==

~~Authors~~: ~~Seoane~~-~~Blanco~~, M., ~~van Raaij~~, M.J.

== Structural highlights ==

<table><tr><td colspan='2'>[[9sil]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_phage_epsilon15 Salmonella phage epsilon15]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9SIL OCA]. For a guided tour on the structure components use [https://proteopedia.org/fgij/fg.htm?mol=9SIL FirstGlance].

~~Description~~: ~~Phage epsilon15 tailspike gp20 esterase domain with a fragment~~ of the ~~Salmonella Anatum~~ O-antigen

</td></tr><tr id='method'><td class="sblockLbl">[[Empirical_models|Method:]]</td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.085Å</td></tr>

[[Category: ~~Unreleased~~ Structures]]

<tr id='ligand'><td class="sblockLbl">[[Ligand|Ligands:]]</td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A1JN6:[(2~{R},3~{R},4~{S},5~{R},6~{S})-3,4,5,6-tetrakis(oxidanyl)oxan-2-yl]methyl+ethanoate'>A1JN6</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=RAM:ALPHA-L-RHAMNOSE'>RAM</scene></td></tr>

[[Category: ~~Van Raaij, M.J~~]]

<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[https://proteopedia.org/fgij/fg.htm?mol=9sil FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9sil OCA], [https://pdbe.org/9sil PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9sil RCSB], [https://www.ebi.ac.uk/pdbsum/9sil PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9sil ProSAT]</td></tr>

[[Category: Seoane-Blanco, M]]

</table>

== Function ==

[https://www.uniprot.org/uniprot/FIBER_BPE15 FIBER_BPE15] Structural component of the short non-contractile tail (PubMed:16452981). The tail comprises six spikes that mediate primary attachment to the host cell lipopolysaccharides (LPS) and display endorhamnosidase enzymatic activity, hydrolyzing the linkage between rhamnose and galactose of the O-antigen polysaccharide. Digestion of the LPS brings the capsid near the cell outer membrane (PubMed:20709082, PubMed:4633001).<ref>PMID:16452981</ref> <ref>PMID:20709082</ref> <ref>PMID:4633001</ref>

== References ==

__TOC__

</StructureSection>

[[Category: Large Structures]]

[[Category: Salmonella phage epsilon15]]

[[Category: Seoane-Blanco M]]

[[Category: Van Raaij MJ]]

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@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
-The entry 9sil is ON HOLD  until Paper Publication
+==Phage epsilon15 tailspike gp20 esterase domain with a fragment of the Salmonella Anatum O-antigen==
+<StructureSection load='9sil' size='340' side='right'caption='[[9sil]], [[Resolution|resolution]] 2.08&Aring;' scene=''>
-Authors: Seoane-Blanco, M., van Raaij, M.J.
+== Structural highlights ==
+<table><tr><td colspan='2'>[[9sil]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_phage_epsilon15 Salmonella phage epsilon15]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9SIL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9SIL FirstGlance]. <br>
-Description: Phage epsilon15 tailspike gp20 esterase domain with a fragment of the Salmonella Anatum O-antigen
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.085&#8491;</td></tr>
-[[Category: Unreleased Structures]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A1JN6:[(2~{R},3~{R},4~{S},5~{R},6~{S})-3,4,5,6-tetrakis(oxidanyl)oxan-2-yl]methyl+ethanoate'>A1JN6</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=RAM:ALPHA-L-RHAMNOSE'>RAM</scene></td></tr>
-[[Category: Van Raaij, M.J]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9sil FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9sil OCA], [https://pdbe.org/9sil PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9sil RCSB], [https://www.ebi.ac.uk/pdbsum/9sil PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9sil ProSAT]</span></td></tr>
-[[Category: Seoane-Blanco, M]]
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/FIBER_BPE15 FIBER_BPE15] Structural component of the short non-contractile tail (PubMed:16452981). The tail comprises six spikes that mediate primary attachment to the host cell lipopolysaccharides (LPS) and display endorhamnosidase enzymatic activity, hydrolyzing the linkage between rhamnose and galactose of the O-antigen polysaccharide. Digestion of the LPS brings the capsid near the cell outer membrane (PubMed:20709082, PubMed:4633001).<ref>PMID:16452981</ref> <ref>PMID:20709082</ref> <ref>PMID:4633001</ref>
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
+[[Category: Salmonella phage epsilon15]]
+[[Category: Seoane-Blanco M]]
+[[Category: Van Raaij MJ]]