11hd: Difference between revisions
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==Effector complex from type IV-C CRISPR-Cas system== | |||
<StructureSection load='11hd' size='340' side='right'caption='[[11hd]], [[Resolution|resolution]] 3.21Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[11hd]] is a 17 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_abyssi Pyrococcus abyssi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=11HD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=11HD FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.21Å</td></tr> | |||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=11hd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=11hd OCA], [https://pdbe.org/11hd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=11hd RCSB], [https://www.ebi.ac.uk/pdbsum/11hd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=11hd ProSAT]</span></td></tr> | |||
</table> | |||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
Type IV-C CRISPR-Cas systems remain enigmatic compared to other class 1 systems. Here, we expand the type IV-C catalog, identifying two phylogenetically distinct clades primarily found in archaea (IV-C1) or bacteria (IV-C2), distinguishable by the Cas10IVc subunit architecture. We functionally and structurally characterize type IV-C1 systems from Thermococcus onnurineus (Ton) and Pyrococcus abyssi (Pab). Type IV-C complexes assemble with crRNAs derived from distinct CRISPR arrays and recognize a 5'-GGG-3' protospacer adjacent motif (PAM) to bind double-stranded DNA targets. Target recognition activates the HD domain of Cas10IVc, triggering metal-dependent collateral cleavage of single-stranded DNA and RNA. This behavior is explained by allosteric alignment of the HD active site, triggered by PAM-dependent R-loop formation, as revealed by cryo-EM. Together, our findings suggest that type IV-C systems provide immunity via non-specific cleavage of nucleic acids generated during mobile genetic element replication or transcription. | |||
Type IV-C CRISPR-Cas effector complexes recognize double-stranded DNA and switch on collateral cleavage of ssDNA and RNA.,Pittman CC, Xu C, Catchpole RJ, Garrett S, Fuchs R, Chu X, Makarova KS, Koonin EV, Zhao P, Wells L, Graveley BR, Ke A, Terns MP Cell Rep. 2026 Sep 5;45(9):117939. doi: 10.1016/j.celrep.2026.117939. PMID:42700392<ref>PMID:42700392</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
[[Category: | </div> | ||
<div class="pdbe-citations 11hd" style="background-color:#fffaf0;"></div> | |||
== References == | |||
<references/> | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Large Structures]] | |||
[[Category: Pyrococcus abyssi]] | |||
[[Category: Catchpole R]] | |||
[[Category: Chu X]] | |||
[[Category: Fuchs R]] | |||
[[Category: Garrett S]] | |||
[[Category: Graveley B]] | |||
[[Category: Ke A]] | |||
[[Category: Koonin E]] | |||
[[Category: Makarova K]] | |||
[[Category: Pittman C]] | |||
[[Category: Terns M]] | |||
[[Category: Wells L]] | |||
[[Category: Xu C]] | |||
[[Category: Zhao P]] | |||
Latest revision as of 08:54, 16 September 2026
Effector complex from type IV-C CRISPR-Cas system
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