38ok: Difference between revisions

Line 1:

~~'''Unreleased structure'''~~

~~The entry~~ 38ok is ~~ON HOLD~~

==AAV2 Rep68(delta1-209)/capsid/DNA complex==

~~Authors~~:

== Structural highlights ==

<table><tr><td colspan='2'>[[38ok]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Adeno-associated_virus_2_Srivastava/1982 Adeno-associated virus 2 Srivastava/1982] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=38OK OCA]. For a guided tour on the structure components use [https://proteopedia.org/fgij/fg.htm?mol=38OK FirstGlance].

~~Description~~:

</td></tr><tr id='method'><td class="sblockLbl">[[Empirical_models|Method:]]</td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 2.93Å</td></tr>

[[Category: ~~Unreleased~~ Structures]]

<tr id='ligand'><td class="sblockLbl">[[Ligand|Ligands:]]</td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=AGS:PHOSPHOTHIOPHOSPHORIC+ACID-ADENYLATE+ESTER'>AGS</scene>, <scene name='pdbligand=DN:UNKNOWN+2-DEOXYNUCLEOTIDE'>DN</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=POP:PYROPHOSPHATE+2-'>POP</scene></td></tr>

<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[https://proteopedia.org/fgij/fg.htm?mol=38ok FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=38ok OCA], [https://pdbe.org/38ok PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=38ok RCSB], [https://www.ebi.ac.uk/pdbsum/38ok PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=38ok ProSAT]</td></tr>

</table>

== Function ==

[https://www.uniprot.org/uniprot/REP68_AAV2S REP68_AAV2S] Plays an essential role in the initiation of viral DNA synthesis. Binds specifically to an inverted terminal repeat element (ITR) on the 3' and 5' ends of the viral DNA, where it cleaves a site specifically to generate a priming site for initiation of the synthesis of a complementary strand. Plays also a role as transcriptional regulator, DNA helicase and as key factor in site-specific integration of the viral genome. Inhibits the host cell cycle G1/S and G2/M transitions. These arrests may provide essential cellular factors for viral DNA replication.<ref>PMID:9882364</ref>

== References ==

__TOC__

</StructureSection>

[[Category: Adeno-associated virus 2 Srivastava/1982]]

[[Category: Large Structures]]

[[Category: Synthetic construct]]

[[Category: Barnakov V]]

[[Category: Escalante CR]]

[[Category: Kaelber JT]]

[[Category: Shen J]]

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@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
-The entry 38ok is ON HOLD
+==AAV2 Rep68(delta1-209)/capsid/DNA complex==
+<StructureSection load='38ok' size='340' side='right'caption='[[38ok]], [[Resolution|resolution]] 2.93&Aring;' scene=''>
-Authors:
+== Structural highlights ==
+<table><tr><td colspan='2'>[[38ok]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Adeno-associated_virus_2_Srivastava/1982 Adeno-associated virus 2 Srivastava/1982] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=38OK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=38OK FirstGlance]. <br>
-Description:
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 2.93&#8491;</td></tr>
-[[Category: Unreleased Structures]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=AGS:PHOSPHOTHIOPHOSPHORIC+ACID-ADENYLATE+ESTER'>AGS</scene>, <scene name='pdbligand=DN:UNKNOWN+2-DEOXYNUCLEOTIDE'>DN</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=POP:PYROPHOSPHATE+2-'>POP</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=38ok FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=38ok OCA], [https://pdbe.org/38ok PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=38ok RCSB], [https://www.ebi.ac.uk/pdbsum/38ok PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=38ok ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/REP68_AAV2S REP68_AAV2S] Plays an essential role in the initiation of viral DNA synthesis. Binds specifically to an inverted terminal repeat element (ITR) on the 3' and 5' ends of the viral DNA, where it cleaves a site specifically to generate a priming site for initiation of the synthesis of a complementary strand. Plays also a role as transcriptional regulator, DNA helicase and as key factor in site-specific integration of the viral genome. Inhibits the host cell cycle G1/S and G2/M transitions. These arrests may provide essential cellular factors for viral DNA replication.<ref>PMID:9882364</ref>
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Adeno-associated virus 2 Srivastava/1982]]
+[[Category: Large Structures]]
+[[Category: Synthetic construct]]
+[[Category: Barnakov V]]
+[[Category: Escalante CR]]
+[[Category: Kaelber JT]]
+[[Category: Shen J]]