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[[Image:1bwt.gif|left|200px]]
{{Seed}}
[[Image:1bwt.png|left|200px]]


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{{STRUCTURE_1bwt|  PDB=1bwt  |  SCENE=  }}  
{{STRUCTURE_1bwt|  PDB=1bwt  |  SCENE=  }}  


'''NMR SOLUTION STRUCTURE OF [D(GCGAATCGC)2]'''
===NMR SOLUTION STRUCTURE OF [D(GCGAATCGC)2]===




==Overview==
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We present the high-resolution solution structures of a self-complementary DNA decamer duplex featuring a single alpha-anomeric nucleotide per strand encompassed by a set of 3'-3' and 5'-5' phosphodiester linkages, d(GCGAAT-3'-3'-alphaT-5'-5'-CGC)2, alphaT, and its unmodified control, d(GCGAATTCGC)2, obtained by restrained molecular dynamics. Interproton distance and deoxyribose ring torsion angle restraints were deduced from homonuclear NOESY and DQF-COSY data, respectively. For both the control and alphaT duplexes, excellent global convergence was observed from two different (A- and B-) starting models. The final average structures of the two duplexes are highly homologous, and overall possess the traits characteristic of right-handed B-DNA duplexes. However, localized differences between the two structures stem from the enhanced conformational exchange in the deoxyribose ring of the cytidine following the 5'-5' linkage, the C3'- exo pseudorotation phase angle of the alpha-nucleotide, and unusual backbone torsions in the 3'-3' and 5'-5' phosphodiester linkages. The structural data reported here are relevant to the design of antisense therapeutics comprised of these modifications.
The line below this paragraph, {{ABSTRACT_PUBMED_9837995}}, adds the Publication Abstract to the page
(as it appears on PubMed at http://www.pubmed.gov), where 9837995 is the PubMed ID number.
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{{ABSTRACT_PUBMED_9837995}}


==About this Structure==
==About this Structure==
Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BWT OCA].  
Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BWT OCA].  


==Reference==
==Reference==
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[[Category: Mujeeb, A.]]
[[Category: Mujeeb, A.]]
[[Category: Ecori recognition site]]
[[Category: Ecori recognition site]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri May  2 12:03:12 2008''
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jun 30 19:50:28 2008''

Revision as of 16:50, 30 June 2008

File:1bwt.png

Template:STRUCTURE 1bwt

NMR SOLUTION STRUCTURE OF [D(GCGAATCGC)2]

Template:ABSTRACT PUBMED 9837995

About this Structure

Full experimental information is available from OCA.

Reference

NMR solution structures of [d(GCGAAT-3'-3'-alphaT-5'-5'-CGC)2] and its unmodified control., Aramini JM, Mujeeb A, Germann MW, Nucleic Acids Res. 1998 Dec 15;26(24):5644-54. PMID:9837995

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