1dsk: Difference between revisions

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[[Image:1dsk.gif|left|200px]]
{{Seed}}
[[Image:1dsk.png|left|200px]]


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{{STRUCTURE_1dsk|  PDB=1dsk  |  SCENE=  }}  
{{STRUCTURE_1dsk|  PDB=1dsk  |  SCENE=  }}  


'''NMR SOLUTION STRUCTURE OF VPR59_86, 20 STRUCTURES'''
===NMR SOLUTION STRUCTURE OF VPR59_86, 20 STRUCTURES===




==Overview==
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Vpr, one of the accessory gene products encoded by HIV-1, is a 96-residue protein with a number of functions, including targeting of the viral pre-integration complex to the nucleus and inducing growth arrest of dividing cells. We have characterized by 2D NMR the solution conformations of bioactive synthetic peptide fragments of Vpr encompassing a pair of H(F/S)RIG sequence motifs (residues 71-75 and 78-82 of HIV-1 Vpr) that cause cell membrane permeabilization and death in yeast and mammalian cells. Due to limited solubility of the peptides in water, their structures were studied in aqueous trifluoroethanol. Peptide Vpr59-86 (residues 59-86 of Vpr) formed an alpha-helix encompassing residues 60-77, with a kink in the vicinity of residue 62. The first of the repeated sequence motifs (HFRIG) participated in the well-defined alpha-helical domain whereas the second (HSRIG) lay outside the helical domain and formed a reverse turn followed by a less ordered region. On the other hand, peptides Vpr71-82 and Vpr71-96, in which the sequence motifs were located at the N-terminus, were largely unstructured under similar conditions, as judged by their C(alpha)H chemical shifts. Thus, the HFRIG and HSRIG motifs adopt alpha-helical and turn structures, respectively, when preceded by a helical structure, but are largely unstructured in isolation. The implications of these findings for interpretation of the structure-function relationships of synthetic peptides containing these motifs are discussed.
The line below this paragraph, {{ABSTRACT_PUBMED_9851370}}, adds the Publication Abstract to the page
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{{ABSTRACT_PUBMED_9851370}}


==About this Structure==
==About this Structure==
1DSK is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Human_immunodeficiency_virus_1 Human immunodeficiency virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DSK OCA].  
1DSK is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Human_immunodeficiency_virus_1 Human immunodeficiency virus 1]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DSK OCA].  


==Reference==
==Reference==
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[[Category: Polypeptide]]
[[Category: Polypeptide]]
[[Category: Viral peptide]]
[[Category: Viral peptide]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri May  2 14:13:25 2008''
 
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Revision as of 20:33, 30 June 2008

File:1dsk.png

Template:STRUCTURE 1dsk

NMR SOLUTION STRUCTURE OF VPR59_86, 20 STRUCTURES

Template:ABSTRACT PUBMED 9851370

About this Structure

1DSK is a Single protein structure of sequence from Human immunodeficiency virus 1. Full experimental information is available from OCA.

Reference

Solution structure of peptides from HIV-1 Vpr protein that cause membrane permeabilization and growth arrest., Yao S, Torres AM, Azad AA, Macreadie IG, Norton RS, J Pept Sci. 1998 Nov;4(7):426-35. PMID:9851370

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