2ipb: Difference between revisions

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~~'''~~Crystal structure of T159D mutant of S. Typhimurium PhoN protein~~'''~~

===Crystal structure of T159D mutant of S. Typhimurium PhoN protein===

~~==Overview==~~

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The Salmonella typhimurium PhoN protein is a nonspecific acid phosphatase and belongs to the phosphatidic acid phosphatase type 2 (PAP2) superfamily. We report here the crystal structures of phosphate-bound PhoN, ~~the PhoN-tungstate complex~~, ~~and~~ the T159D mutant of PhoN along with functional characterization of three mutants: L39T, T159D, and D201N. Invariant active site residues, Lys-123, Arg-130, Ser-156, Gly-157, His-158, and Arg-191, interact with phosphate and tungstate oxyanions. Ser-156 also accepts a hydrogen bond from Thr-159. The T159D mutation, surprisingly, severely diminishes phosphatase activity, apparently by disturbing the ~~active site scaffold~~: ~~Arg-191 is swung out of the active site resulting in conformational changes in His-158 and His-197 residues~~. ~~Our results reveal a hitherto unknown functional role of Arg-191, namely, restricting the active conformation of catalytic His-158 and His-197 residues~~. ~~Consistent with the conserved nature of Asp-201 in the PAP2 superfamily~~, ~~the D201N mutation completely abolished phosphatase activity. On the basis of this observation and in silico analysis we suggest that the crucial mechanistic role of Asp-201~~ is ~~to stabilize the positive charge on the phosphohistidine intermediate generated by the transfer of phosphoryl to the nucleophile, His-197, located within hydrogen bond distance to~~ the ~~invariant Asp-201~~. ~~This is in contrast to earlier suggestions that Asp~~-~~201 stabilizes His~~-197 and the His197-Asp201 dyad facilitates formation of the phosphoenzyme intermediate through a charge-relay system. Finally, the L39T mutation in the conserved polyproline motif (39LPPPP43) of dimeric PhoN leads to a marginal reduction in activity, in contrast to the nearly 50-fold reduction observed for monomeric Prevotella intermedia acid phosphatase, suggesting that the varying quaternary structure of PhoN orthologues may have functional significance.

The line below this paragraph, {{ABSTRACT_PUBMED_17263560}}, adds the Publication Abstract to the page

(as it appears on PubMed at http://www.pubmed.gov), where 17263560 is the PubMed ID number.

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==About this Structure==

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==Reference==

Structure and mutational analysis of the PhoN protein of Salmonella typhimurium provide insight into mechanistic details., Makde RD, Mahajan SK, Kumar V, Biochemistry. 2007 Feb 27;46(8):2079-90. Epub 2007 Jan 31. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17263560 17263560]

Purification, crystallization and preliminary X-ray diffraction studies of recombinant class A non-specific acid phosphatase of Salmonella typhimurium., Makde RD, Kumar V, Rao AS, Yadava VS, Mahajan SK, Acta Crystallogr D Biol Crystallogr. 2003 Mar;59(Pt 3):515-8. Epub 2003, Feb 21. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12595712 12595712]

Protein engineering of class-A non-specific acid phosphatase (PhoN) of Salmonella typhimurium: modulation of the pH-activity profile., Makde RD, Dikshit K, Kumar V, Biomol Eng. 2006 Oct;23(5):247-51. Epub 2006 Jul 8. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16901752 16901752]

[[Category: Acid phosphatase]]

[[Category: Salmonella typhimurium]]

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[[Category: Crystal structure]]

[[Category: T159d mutant of the phon protein]]

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-[[Image:2ipb.gif|left|200px]]
+{{Seed}}
+[[Image:2ipb.png|left|200px]]
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 {{STRUCTURE_2ipb|  PDB=2ipb  |  SCENE=  }}
-'''Crystal structure of T159D mutant of S. Typhimurium PhoN protein'''
+===Crystal structure of T159D mutant of S. Typhimurium PhoN protein===
-==Overview==
+<!--
-The Salmonella typhimurium PhoN protein is a nonspecific acid phosphatase and belongs to the phosphatidic acid phosphatase type 2 (PAP2) superfamily. We report here the crystal structures of phosphate-bound PhoN, the PhoN-tungstate complex, and the T159D mutant of PhoN along with functional characterization of three mutants: L39T, T159D, and D201N. Invariant active site residues, Lys-123, Arg-130, Ser-156, Gly-157, His-158, and Arg-191, interact with phosphate and tungstate oxyanions. Ser-156 also accepts a hydrogen bond from Thr-159. The T159D mutation, surprisingly, severely diminishes phosphatase activity, apparently by disturbing the active site scaffold: Arg-191 is swung out of the active site resulting in conformational changes in His-158 and His-197 residues. Our results reveal a hitherto unknown functional role of Arg-191, namely, restricting the active conformation of catalytic His-158 and His-197 residues. Consistent with the conserved nature of Asp-201 in the PAP2 superfamily, the D201N mutation completely abolished phosphatase activity. On the basis of this observation and in silico analysis we suggest that the crucial mechanistic role of Asp-201 is to stabilize the positive charge on the phosphohistidine intermediate generated by the transfer of phosphoryl to the nucleophile, His-197, located within hydrogen bond distance to the invariant Asp-201. This is in contrast to earlier suggestions that Asp-201 stabilizes His-197 and the His197-Asp201 dyad facilitates formation of the phosphoenzyme intermediate through a charge-relay system. Finally, the L39T mutation in the conserved polyproline motif (39LPPPP43) of dimeric PhoN leads to a marginal reduction in activity, in contrast to the nearly 50-fold reduction observed for monomeric Prevotella intermedia acid phosphatase, suggesting that the varying quaternary structure of PhoN orthologues may have functional significance.
+The line below this paragraph, {{ABSTRACT_PUBMED_17263560}}, adds the Publication Abstract to the page
+(as it appears on PubMed at http://www.pubmed.gov), where 17263560 is the PubMed ID number.
+-->
+{{ABSTRACT_PUBMED_17263560}}
 ==About this Structure==
@@ Line 20: / Line 24: @@
 ==Reference==
 Structure and mutational analysis of the PhoN protein of Salmonella typhimurium provide insight into mechanistic details., Makde RD, Mahajan SK, Kumar V, Biochemistry. 2007 Feb 27;46(8):2079-90. Epub 2007 Jan 31. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17263560 17263560]
+Purification, crystallization and preliminary X-ray diffraction studies of recombinant class A non-specific acid phosphatase of Salmonella typhimurium., Makde RD, Kumar V, Rao AS, Yadava VS, Mahajan SK, Acta Crystallogr D Biol Crystallogr. 2003 Mar;59(Pt 3):515-8. Epub 2003, Feb 21. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12595712 12595712]
+Protein engineering of class-A non-specific acid phosphatase (PhoN) of Salmonella typhimurium: modulation of the pH-activity profile., Makde RD, Dikshit K, Kumar V, Biomol Eng. 2006 Oct;23(5):247-51. Epub 2006 Jul 8. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16901752 16901752]
 [[Category: Acid phosphatase]]
 [[Category: Salmonella typhimurium]]
@@ Line 28: / Line 36: @@
 [[Category: Crystal structure]]
 [[Category: T159d mutant of the phon protein]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May  4 07:44:26 2008''
+''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 18:22:08 2008''