1zry: Difference between revisions

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[[Image:1zry.gif|left|200px]]
{{Seed}}
[[Image:1zry.png|left|200px]]


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{{STRUCTURE_1zry|  PDB=1zry  |  SCENE=  }}  
{{STRUCTURE_1zry|  PDB=1zry  |  SCENE=  }}  


'''NMR structural analysis of apo chicken liver bile acid binding protein'''
===NMR structural analysis of apo chicken liver bile acid binding protein===




==Overview==
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Apo chicken liver bile acid-binding protein has been structurally characterized by NMR. The dynamic behavior of the protein in its apo- and holo-forms, complexed with chenodeoxycholate, has been determined via (15)N relaxation and steady state heteronuclear (15)N((1)H) nuclear Overhauser effect measurements. The dynamic parameters were obtained at two pH values (5.6 and 7.0) for the apoprotein and at pH 7.0 for the holoprotein, using the model free approach. Relaxation studies, performed at three different magnetic fields, revealed a substantial conformational flexibility on the microsecond to millisecond time scales, mainly localized in the C-terminal face of the beta-barrel. The observed dynamics are primarily caused by the protonation/deprotonation of a buried histidine residue, His(98), located on this flexible face. A network of polar buried side chains, defining a spine going from the E to J strand, is likely to provide the long range connectivity needed to communicate motion from His(98) to the EF loop region. NMR data are accompanied by molecular dynamics simulations, suggesting that His(98) protonation equilibrium is the triggering event for the modulation of a functionally important motion, i.e. the opening/closing at the protein open end, whereas ligand binding stabilizes one of the preexisting conformations (the open form). The results presented here, complemented with an analysis of proteins belonging to the intracellular lipid-binding protein family, are consistent with a model of allosteric activation governing the binding mechanism. The functional role of this mechanism is thoroughly discussed within the framework of the mechanism for the enterohepatic circulation of bile acids.
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{{ABSTRACT_PUBMED_16439356}}


==About this Structure==
==About this Structure==
1ZRY is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZRY OCA].  
1ZRY is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZRY OCA].  


==Reference==
==Reference==
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[[Category: Zetta, L.]]
[[Category: Zetta, L.]]
[[Category: Beta barrel]]
[[Category: Beta barrel]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May  3 17:59:57 2008''
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 19:35:07 2008''

Revision as of 16:35, 27 July 2008

File:1zry.png

Template:STRUCTURE 1zry

NMR structural analysis of apo chicken liver bile acid binding protein

Template:ABSTRACT PUBMED 16439356

About this Structure

1ZRY is a Single protein structure of sequence from Gallus gallus. Full experimental information is available from OCA.

Reference

NMR dynamic studies suggest that allosteric activation regulates ligand binding in chicken liver bile acid-binding protein., Ragona L, Catalano M, Luppi M, Cicero D, Eliseo T, Foote J, Fogolari F, Zetta L, Molinari H, J Biol Chem. 2006 Apr 7;281(14):9697-709. Epub 2006 Jan 26. PMID:16439356

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