2e7j: Difference between revisions

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[[Image:2e7j.jpg|left|200px]]
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[[Image:2e7j.png|left|200px]]


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{{STRUCTURE_2e7j|  PDB=2e7j  |  SCENE=  }}  
{{STRUCTURE_2e7j|  PDB=2e7j  |  SCENE=  }}  


'''Crystal Structure of Sep-tRNA:Cys-tRNA Synthase from Archaeoglobus fulgidus'''
===Crystal Structure of Sep-tRNA:Cys-tRNA Synthase from Archaeoglobus fulgidus===




==Overview==
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In the ancient organisms, methanogenic archaea, lacking the canonical cysteinyl-tRNA synthetase, Cys-tRNA(Cys) is produced by an indirect pathway, in which O-phosphoseryl-tRNA synthetase ligates O-phosphoserine (Sep) to tRNA(Cys) and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys). In this study, the crystal structure of SepCysS from Archaeoglobus fulgidus has been determined at 2.4 A resolution. SepCysS forms a dimer, composed of monomers bearing large and small domains. The large domain harbors the seven-stranded beta-sheet, which is typical of the pyridoxal 5'-phosphate (PLP)-dependent enzymes. In the active site, which is located near the dimer interface, PLP is covalently bound to the side-chain of the conserved Lys209. In the proximity of PLP, a sulfate ion is bound by the side-chains of the conserved Arg79, His103, and Tyr104 residues. The active site is located deep within the large, basic cleft to accommodate Sep-tRNA(Cys). On the basis of the surface electrostatic potential, the amino acid residue conservation mapping, the position of the bound sulfate ion, and the substrate amino acid binding manner in other PLP-dependent enzymes, a binding model of Sep-tRNA(Cys) to SepCysS was constructed. One of the three strictly conserved Cys residues (Cys39, Cys42, or Cys247), of one subunit may play a crucial role in the catalysis in the active site of the other subunit.
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{{ABSTRACT_PUBMED_17512006}}


==About this Structure==
==About this Structure==
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[[Category: Seven-stranded bete-strand]]
[[Category: Seven-stranded bete-strand]]
[[Category: Structural genomic]]
[[Category: Structural genomic]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 21:00:20 2008''

Revision as of 18:00, 28 July 2008

File:2e7j.png

Template:STRUCTURE 2e7j

Crystal Structure of Sep-tRNA:Cys-tRNA Synthase from Archaeoglobus fulgidus

Template:ABSTRACT PUBMED 17512006

About this Structure

2E7J is a Single protein structure of sequence from Archaeoglobus fulgidus. Full crystallographic information is available from OCA.

Reference

Structural insights into the second step of RNA-dependent cysteine biosynthesis in archaea: crystal structure of Sep-tRNA:Cys-tRNA synthase from Archaeoglobus fulgidus., Fukunaga R, Yokoyama S, J Mol Biol. 2007 Jun 29;370(1):128-41. Epub 2007 May 4. PMID:17512006

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