1t2m: Difference between revisions

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[[Image:1t2m.gif|left|200px]]
{{Seed}}
[[Image:1t2m.png|left|200px]]


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{{STRUCTURE_1t2m|  PDB=1t2m  |  SCENE=  }}  
{{STRUCTURE_1t2m|  PDB=1t2m  |  SCENE=  }}  


'''Solution Structure Of The Pdz Domain Of AF-6'''
===Solution Structure Of The Pdz Domain Of AF-6===




==Overview==
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AF-6 is a key molecule essential for structure organization of cell-cell junction of polarized epithelia. It belongs to a novel cell-cell adhesion system. The AF-6 PDZ domain mediates interactions by binding to a specific amino acid sequence in target proteins. Here we report the solution structure of the AF-6 PDZ domain determined by NMR. Previously, the AF-6 PDZ domain was considered to be a class II PDZ domain. However we found that a unique hydrophilic amino acid, Gln70, at position alphaB1 makes the alphaB/betaB groove of the AF-6 PDZ domain significantly different from that of the canonical class II PDZ domain. The AF-6 PDZ domain does not have the second hydrophobic binding pocket, and the N-terminal end of alphaB is closer to betaB. Using BIACORE and NMR chemical shift perturbation experiments, we have studied the binding characteristics of the PDZ domain to the C-terminal peptide of Neurexin, KKNKDKEYYV, and that of Bcr, KRQSILFSTEV. The C-terminal peptide of Neurexin is a class II ligand, whereas that of Bcr is a class I ligand. The dissociation constants of these ligands were 4.08 x 10(-7) and 2.23 x 10(-6) m, respectively. Each of the four C-terminal positions in Neurexin and Bcr may contribute to the interaction. The three-dimensional models of the AF-6 PDZ-Neurexin C-terminal peptide complex and the AF-6 PDZ-Bcr C-terminal peptide complex were built up by molecular dynamics simulations. Unlike the canonical class II PDZ domain, Ala74 at alphaB5 rather than the residue at alphaB1 makes direct hydrophobic contact with the side chain of Tyr at the -2 position of the ligand.
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{{ABSTRACT_PUBMED_15684424}}


==About this Structure==
==About this Structure==
1T2M is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T2M OCA].  
1T2M is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T2M OCA].  


==Reference==
==Reference==
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[[Category: Chromosomal translocation]]
[[Category: Chromosomal translocation]]
[[Category: Proto-oncogene]]
[[Category: Proto-oncogene]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May  3 09:26:24 2008''
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 02:47:01 2008''

Revision as of 23:47, 28 July 2008

File:1t2m.png

Template:STRUCTURE 1t2m

Solution Structure Of The Pdz Domain Of AF-6

Template:ABSTRACT PUBMED 15684424

About this Structure

1T2M is a Single protein structure of sequence from Homo sapiens. Full experimental information is available from OCA.

Reference

Solution structure of AF-6 PDZ domain and its interaction with the C-terminal peptides from Neurexin and Bcr., Zhou H, Xu Y, Yang Y, Huang A, Wu J, Shi Y, J Biol Chem. 2005 Apr 8;280(14):13841-7. Epub 2005 Jan 31. PMID:15684424

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