2a8z: Difference between revisions

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[[Image:2a8z.gif|left|200px]]
{{Seed}}
[[Image:2a8z.png|left|200px]]


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{{STRUCTURE_2a8z|  PDB=2a8z  |  SCENE=  }}  
{{STRUCTURE_2a8z|  PDB=2a8z  |  SCENE=  }}  


'''Structure Of A Cold-Adapted Family 8 Xylanase'''
===Structure Of A Cold-Adapted Family 8 Xylanase===




==Overview==
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Site-directed mutagenesis and a comparative characterisation of the kinetic parameters, pH dependency of activity and thermal stability of mutant and wild-type enzymes have been used in association with crystallographic analysis to delineate the functions of several active site residues in a novel glycoside hydrolase family 8 xylanase. Each of the residues investigated plays an essential role in this enzyme: E78 as the general acid, D281 as the general base and in orientating the nucleophilic water molecule, Y203 in maintaining the position of the nucleophilic water molecule and in structural integrity and D144 in sugar ring distortion and transition state stabilization. Interestingly, although crystal structure analyses and the pH-activity profiles clearly identify the functions of E78 and D281, substitution of these residues with their amide derivatives results in only a 250-fold and 700-fold reduction in their apparent k(cat) values, respectively. This, in addition to the observation that the proposed general base is not conserved in all glycoside hydrolase family 8 enzymes, indicates that the mechanistic architecture in this family of inverting enzymes is more complex than is conventionally believed and points to a diversity in the identity of the mechanistically important residues as well as in the arrangement of the intricate microenvironment of the active site among members of this family.
The line below this paragraph, {{ABSTRACT_PUBMED_16246370}}, adds the Publication Abstract to the page
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{{ABSTRACT_PUBMED_16246370}}


==About this Structure==
==About this Structure==
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[[Category: Temperature]]
[[Category: Temperature]]
[[Category: Xylan degradation]]
[[Category: Xylan degradation]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May  3 18:45:37 2008''
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 06:27:53 2008''

Revision as of 03:27, 29 July 2008

File:2a8z.png

Template:STRUCTURE 2a8z

Structure Of A Cold-Adapted Family 8 Xylanase

Template:ABSTRACT PUBMED 16246370

About this Structure

2A8Z is a Single protein structure of sequence from Pseudoalteromonas haloplanktis. Full crystallographic information is available from OCA.

Reference

Study of the active site residues of a glycoside hydrolase family 8 xylanase., Collins T, De Vos D, Hoyoux A, Savvides SN, Gerday C, Van Beeumen J, Feller G, J Mol Biol. 2005 Nov 25;354(2):425-35. Epub 2005 Oct 10. PMID:16246370

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