User:Wayne Decatur/Sandboxmangai: Difference between revisions
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made by chains A and B of 2h9d morphed to chains C and D | made by chains A and B of 2h9d morphed to chains C and D | ||
Click <scene name='User:Wayne_Decatur/Sandboxmangai/2h9d_morph/2'>here to initiate the animation showing morph</scene> | Click <scene name='User:Wayne_Decatur/Sandboxmangai/2h9d_morph/2'>here to initiate the animation showing morph of open conformation with pyruvate bound morphing to closed conformation with pyruvate bound</scene>.<br> | ||
Morph uses all 8 models obtained from editing sets of chains A and B and chains C and D to be submitted to Yale Morph server.<br> | |||
Copied C and D and pyruvates to new files. For chains A and B file, I deleted C and D and CA heteroatom. Used alter command (example for chain c= select chain C; alter (chain C),chain='A') in pymol to change names of C and D chains in file to A and B. Then removed some residues with gaps to match better but seemed unnecessary because one worked before doing that but I thought it failed because went to spam. | Copied C and D and pyruvates to new files. For chains A and B file, I deleted C and D and CA heteroatom. Used alter command (example for chain c= select chain C; alter (chain C),chain='A') in pymol to change names of C and D chains in file to A and B. Then removed some residues with gaps to match better but seemed unnecessary because one worked before doing that but I thought it failed because went to spam. | ||
