User:Wayne Decatur/SandboxRibosome: Difference between revisions
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==Sandbox for Ribosome== | ==Sandbox for Ribosome== | ||
==Structure== | ==Structure== | ||
<table width='550' align='right' cellpadding='5'><tr><td rowspan='2'> </td><td bgcolor='#eeeeee'><applet load='1jgo1giy.gz.pdb' size='540' frame='true' align='right' scene='User:Wayne_Decatur/SandboxRibosome/ | <table width='550' align='right' cellpadding='5'><tr><td rowspan='2'> </td><td bgcolor='#eeeeee'><applet load='1jgo1giy.gz.pdb' size='540' frame='true' align='right' scene='User:Wayne_Decatur/SandboxRibosome/Bothmodels3/1' /></td></tr><tr><td bgcolor='#eeeeee'><center>'''The Ribosome''' (1jgo and 1giy), resolution 5.5Å (<scene name='User:Wayne_Decatur/SandboxRibosome/Bothmodels3/1'>initial scene</scene>).</center></td></tr></table> | ||
1jgo1giy.gz.pdb is the file being used. | 1jgo1giy.gz.pdb is the file being used. | ||
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1jgo1giy.gz.pdb is the file being used. | 1jgo1giy.gz.pdb is the file being used. | ||
I figured out how to color components of models using decimals! | I figured out how to color components of models using decimals! | ||
select all; cartoon 0.5; | |||
For example, for large subunit: | For example, for large subunit: | ||
select 1.1 and protein; color [Xa52a2a]; color cartoon [Xa52a2a]; | select 1.1 and protein; color [Xa52a2a]; color cartoon [Xa52a2a]; | ||
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For small subunit, | For small subunit, | ||
select 1.2 and protein; color cartoon [x6060EE]; color [x6060EE]; | select 1.2 and protein; color cartoon [x6060EE]; color [x6060EE]; | ||
select 1.2 and :b; spacefill on; color pink; | select 1.2 and :b; spacefill on; color pink; color cartoon pink; cartoon; off; | ||
select 1.2 and :c; spacefill on; color purple; | select 1.2 and :c; spacefill on; color purple; color cartoon purple; cartoon; off; | ||
select 1.2 and :d; spacefill on; color cyan; | select 1.2 and :d; spacefill on; color cyan; color cartoon cyan; cartoon; off; | ||
select 1.2 and :a; color cartoon [Xaaaaaa]; | select 1.2 and :a; color cartoon [Xaaaaaa]; | ||
select 1.2 and :1; color yellow; backbone 3.0; | select 1.2 and :1; color yellow; backbone 3.0; | ||
select protein; cartoon on; | |||
model all; | model all; | ||
--!> | --!> | ||
