User:Wayne Decatur/SandboxRibosome: Difference between revisions

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Wayne Decatur (talk | contribs)
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Wayne Decatur (talk | contribs)
Editor, widgeteditor
7,824 edits
No edit summary
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==Structure==
==Structure==
<table width='550' align='right' cellpadding='5'><tr><td rowspan='2'>&nbsp;</td><td bgcolor='#eeeeee'><applet load='1jgo1giy.gz.pdb' size='540' frame='true' align='right' scene='User:Wayne_Decatur/SandboxRibosome/Bothmodels5/1' /></td></tr><tr><td bgcolor='#eeeeee'><center>'''The Ribosome''' (1jgo and 1giy), resolution 5.5&Aring; (<scene name='User:Wayne_Decatur/SandboxRibosome/Bothmodels5/1'>initial scene</scene>).</center></td></tr></table>
<table width='550' align='right' cellpadding='5'><tr><td rowspan='2'>&nbsp;</td><td bgcolor='#eeeeee'><applet load='1jgo1giy.gz.pdb' size='540' frame='true' align='right' scene='User:Wayne_Decatur/SandboxRibosome/Bothmodels5/1' /></td></tr><tr><td bgcolor='#eeeeee'><center>'''The Ribosome''' (1jgo and 1giy), resolution 5.5&Aring; (<scene name='User:Wayne_Decatur/SandboxRibosome/Bothmodels5/1'>initial scene</scene>).</center></td></tr></table>
1jgo1giy.gz.pdb is the file being used.
 




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'color firebrick' seems to be same as 'color [Xa52a2a]'
'color firebrick' seems to be same as 'color [Xa52a2a]'
1jgo1giy.gz.pdb is the file being used.
1jgo1giy.gz.pdb is the file being used.
I figured out how to color components of models using decimals!
select all; cartoon 0.5;
For example, for large subunit:
select 1.1 and protein; color [Xa52a2a]; color cartoon [Xa52a2a];
select 1.1 and :b; color cartoon [X444444];
For small subunit,
select 1.2 and protein; color cartoon [x6060EE]; color [x6060EE];
select 1.2 and :b; spacefill on; color pink; color cartoon pink; cartoon off;
select 1.2 and :c; spacefill on; color purple; color cartoon purple; cartoon off;
select 1.2 and :d; spacefill on; color cyan; color cartoon cyan; cartoon off;
select 1.2 and :a; color cartoon [Xaaaaaa];
select 1.2 and :1; color yellow; color cartoon yellow; wireframe 0.9;
trace 3.0; cartoon off; select 16-21:1; backbone off; spacefill 0.95; backbone 2.0;
select protein; cartoon on;
model all;
--!>
--!>
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