User:Michael Strong/H1N1/MP: Difference between revisions

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==MP2 Structure ==
<applet load='MMP21.pdb' size='300' frame='true' align='center' caption='MP2 Homology Model, Mexico Strain, A/Mexico/InDRE4487/2009, residues 23-60, 82% sequence identity to pdp template [http://proteopedia.org/wiki/index.php/2rlf 2rlf]' scene ='User:Michael_Strong/H1N1/MP2/MSA/1/1'/>
==MP2 Sequence Polymorphisms ==
{| class="wikitable"
|Protein
|Polymorphism
|Strain with Polymorphism
|Number of Strains with Polymorphism
|----
|MP2
|L3P
|gi|227831764_A/California/05/2
|1
|----
|MP2
|Y52H
|gi|229609551_A/Stockholm/28/20
|1
|<scene name='User:Michael_Strong/H1N1/MP2/MSA/52/1'>52</scene>
|----
|MP2
|T65M
|gi|229536073_A/Texas/07/2009
|1
|----
|MP2
|S82N
|gi|237511788_A/Mexico/4108/200
|1
|----
|}
==MP2 Multiple Sequence Alignment ==
H1N1 Swine Flu Multiple Sequence Alignment of MP2 Protein, 64 sequences
<pre>
gi|229892724_A/Canada-NS/RV153      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|229368682_A/Denmark/513/200      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|229299506_A/Texas/05/2009        MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|227977141_A/California/07/2      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|227977109_A/California/04/2      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|227977121_A/California/08/2      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|229396490_A/Ohio/07/2009        MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|229396474_A/New_York/19/200      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|229396458_A/Texas/06/2009        MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|229396370_A/New_York/11/200      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|229484037_A/Mexico/InDRE448      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|229462699_A/Valencia/GP4/20      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|229462687_A/Castilla-La_Man      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|229535995_A/South_Carolina/      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|229536119_A/Michigan/02/200      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|229536047_A/Arizona/02/2009      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|229783401_A/New_York/1682/2      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|229892718_A/Mexico/InDRE411      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|229892713_A/Canada-NS/RV153      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|237511785_A/Mexico/4603/200      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|229536073_A/Texas/07/2009        MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|237511788_A/Mexico/4108/200      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|228481040_A/Auckland/2/2009      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|229396384_A/New_York/18/200      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|229396430_A/New_York/10/200      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|229484040_A/Canada-ON/RV152      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|229462711_A/Pais_Vasco/GP20      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|229535814_A/Texas/09/2009        MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|229535795_A/New_York/22/200      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|229536086_A/Indiana/09/2009      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|229536020_A/Arizona/01/2009      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|229783380_A/New_York/1669/2      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|229892715_A/Canada-ON/RV152      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|229892721_A/Canada-AB/RV153      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|237511761_A/Mexico/4115/200      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|237624333_A/swine/Alberta/O      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|237511767_A/Mexico/4604/200      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|229892727_A/Canada-ON/RV152      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|229783371_A/Korea/01/2009        MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|229598892_A/Texas/15/2009        MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|229535832_A/California/14/2      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|229536036_A/Minnesota/02/20      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|229535982_A/Texas/08/2009        MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|229462723_A/Castilla-La_Man      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|229484034_A/Canada-NS/RV153      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|229396360_A/New_York/06/200      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|229396446_A/New_York/15/200      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|228481037_A/Auckland/3/2009      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|229536062_A/New_York/20/200      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|229396497_A/Ohio/07/2009        MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|227977153_A/California/08/2      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|227831781_A/California/06/2      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|227977165_A/California/07/2      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|227831804_A/California/09/2      MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|229299526_A/Texas/04/2009        MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|227831795_A/Texas/05/2009        --LLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 48
gi|237511779_A/Mexico/4486/200      ---LTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 47
gi|227977102_A/California/10/2      ---LTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 47
gi|237511782_A/Mexico/4482/200      ----TEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 46
gi|227809837_A/California/04/2      ----TEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 46
gi|227831822_A/Texas/04/2009        ----TEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 46
gi|227831829_A/Texas/04/2009        ----TEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 46
gi|227831764_A/California/05/2      MSPLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
gi|229609551_A/Stockholm/28/20      --------TPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 42
                                            ******************************************
gi|229892724_A/Canada-NS/RV153      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|229368682_A/Denmark/513/200      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIE-- 95
gi|229299506_A/Texas/05/2009        IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|227977141_A/California/07/2      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|227977109_A/California/04/2      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|227977121_A/California/08/2      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|229396490_A/Ohio/07/2009        IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|229396474_A/New_York/19/200      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|229396458_A/Texas/06/2009        IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|229396370_A/New_York/11/200      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|229484037_A/Mexico/InDRE448      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|229462699_A/Valencia/GP4/20      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|229462687_A/Castilla-La_Man      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|229535995_A/South_Carolina/      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|229536119_A/Michigan/02/200      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|229536047_A/Arizona/02/2009      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|229783401_A/New_York/1682/2      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|229892718_A/Mexico/InDRE411      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|229892713_A/Canada-NS/RV153      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|237511785_A/Mexico/4603/200      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|229536073_A/Texas/07/2009        IYRRFKYGLKRGPSMEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|237511788_A/Mexico/4108/200      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQNAVDVDDGHFVNIELE 97
gi|228481040_A/Auckland/2/2009      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|229396384_A/New_York/18/200      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|229396430_A/New_York/10/200      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|229484040_A/Canada-ON/RV152      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|229462711_A/Pais_Vasco/GP20      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|229535814_A/Texas/09/2009        IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|229535795_A/New_York/22/200      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|229536086_A/Indiana/09/2009      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|229536020_A/Arizona/01/2009      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|229783380_A/New_York/1669/2      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|229892715_A/Canada-ON/RV152      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|229892721_A/Canada-AB/RV153      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|237511761_A/Mexico/4115/200      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|237624333_A/swine/Alberta/O      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|237511767_A/Mexico/4604/200      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|229892727_A/Canada-ON/RV152      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|229783371_A/Korea/01/2009        IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|229598892_A/Texas/15/2009        IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|229535832_A/California/14/2      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|229536036_A/Minnesota/02/20      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|229535982_A/Texas/08/2009        IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|229462723_A/Castilla-La_Man      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|229484034_A/Canada-NS/RV153      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|229396360_A/New_York/06/200      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|229396446_A/New_York/15/200      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|228481037_A/Auckland/3/2009      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|229536062_A/New_York/20/200      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|229396497_A/Ohio/07/2009        IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|227977153_A/California/08/2      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|227831781_A/California/06/2      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|227977165_A/California/07/2      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|227831804_A/California/09/2      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|229299526_A/Texas/04/2009        IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|227831795_A/Texas/05/2009        IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 95
gi|237511779_A/Mexico/4486/200      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 94
gi|227977102_A/California/10/2      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 94
gi|237511782_A/Mexico/4482/200      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 93
gi|227809837_A/California/04/2      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 93
gi|227831822_A/Texas/04/2009        IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 93
gi|227831829_A/Texas/04/2009        IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 93
gi|227831764_A/California/05/2      IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
gi|229609551_A/Stockholm/28/20      IHRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 89
                                    *:************ ****************.************* 
</pre>
</pre>
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