User:Wayne Decatur/Generate Unfolded Structures: Difference between revisions
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New page: This describes how to unfold whole or parts of chains using Pymol. Please note this will generate a structure that is just for representational purposes and is not thermodynamically stabl... |
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This describes how to unfold whole or parts of chains using Pymol. | This describes how to unfold whole or parts of chains in solved structures using Pymol. | ||
Please note this will generate a structure that is just for representational purposes and is not thermodynamically stable. To translate or rotate a chain or parts relative the rest of the structure see [User:Wayne Decatur/Moving Components or Parts of Structures| my page on moving parts or components of | This came up because Adrianna wanted to generate structures derived from hers where parts were unfolded or folded differently. I thought this could very useful for illustrative purposes for many users. For maybe simulating denaturing or other dynamic processes. | ||
Please note this will generate a structure that is just for representational purposes and is not thermodynamically stable. To translate or rotate a chain or parts relative the rest of the structure see [User:Wayne Decatur/Moving Components or Parts of Structures| my page on moving parts or components of structures using Pymol]. | |||
Add information on breaking disulfides first and reforming others. | Add information on breaking disulfides first and reforming others. | ||
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*[http://www.mail-archive.com/pymol-users@lists.sourceforge.net/msg01890.html Posting about using Sculpting in Pymol to manipulate structures] | *[http://www.mail-archive.com/pymol-users@lists.sourceforge.net/msg01890.html Posting about using Sculpting in Pymol to manipulate structures] | ||
Add link to bottom part of my | Add link to bottom part of my Morphing page because might want to let Morphing server generate structures transitioning between the folded and modified states for making an animation. | ||
