User:Wayne Decatur/Moving Components or Parts of Structures: Difference between revisions
From Proteopedia
Jump to navigationJump to search
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
This describes how to do this in Pymol and assumes you initate a session with the console containing the menubar. | This describes how to do this in Pymol and assumes you initate a session with the console containing the menubar. | ||
Using Pymol commands to do this in commands is described at the [http://pymolwiki.org/index.php/Modeling_and_Editing_Structures Modeling and Editing Structures page] at the Pymol Wiki. | Using Pymol commands to do this in commands is described at the [http://pymolwiki.org/index.php/Modeling_and_Editing_Structures Modeling and Editing Structures page] at the Pymol Wiki. | ||
| Line 25: | Line 25: | ||
Select part to move and split it off from the original structure either using commands as outlined on the [http://pymolwiki.org/index.php/Modeling_and_Editing_Structures Modeling and Editing Structures page] or by selecting the interested section (using sequence bar or selection commands) and making it a separate object????? VERIFY THIS AND EASIEST WAY TO NOT HAVE THAT PART DUPLICATED.??? | Select part to move and split it off from the original structure either using commands as outlined on the [http://pymolwiki.org/index.php/Modeling_and_Editing_Structures Modeling and Editing Structures page] or by selecting the interested section (using sequence bar or selection commands) and making it a separate object????? VERIFY THIS AND EASIEST WAY TO NOT HAVE THAT PART DUPLICATED.??? | ||
Now you essentially do as in the first part to translate and/or rotate this object relative the other structural components. However, while the moving part won't simply be a separate chain, but a | Now you essentially do as in the first part to translate and/or rotate this object relative the other structural components. However, while the moving part won't simply be a separate chain, but a separate object to Pymol, most commands and actions are the same. | ||
| Line 36: | Line 36: | ||
*[http://www.rubor.de/bioinf/tips_advanced.html Has some other information on moving elements relative others] <br> | *[http://www.rubor.de/bioinf/tips_advanced.html Has some other information on moving elements relative others] <br> | ||
*[http://www.cem.msu.edu/~posey/cem181h/PyMOLtutorial05/tutorial05.htm Intro page with some help] <br> | *[http://www.cem.msu.edu/~posey/cem181h/PyMOLtutorial05/tutorial05.htm Intro page with some help] <br> | ||
Similar manipulations can be done with separate structures in SWISS-PDB viewer by toggling off movement in the layers control panel for the layer to remain in place. | |||
