7n67 | pdb_00007n67

Crystal structure of HCAN_0198, a 3,4-ketoisomerase from Helicobacter canadensis

spinqualitylabelsall models 7n67, resolution 2.50Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 7n67 is a 2 chain structure with sequence from Helicobacter canadensis MIT 98-5491. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Method: X-ray diffraction, Resolution 2.5Å Ligands: TMA, TYD Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Function C5ZW00_9HELI Publication Abstract from PubMed It is now well-established that the Gram-negative bacterium, Helicobacter pylori, causes gastritis in humans. In recent years it has become apparent that the so-called non-pylori Helicobacters, normally infecting pigs, cats, and dogs, may also be involved in human pathology via zoonotic transmission. Indeed, more than 30 species of non-pylori Helicobacters have been identified thus far. One such organism is Helicobacter canadensis, an emerging pathogen whose genome sequence was published in 2009. Given our long-standing interest in the biosynthesis of N-formylated sugars found in the O-antigens of some Gram-negative bacteria, we were curious as to whether H. canadensis produces such unusual carbohydrates. Here we demonstrate using both biochemical and structural techniques, that the proteins encoded by the HCAN_0198, HCAN_0204, and HCAN_0200 genes in H. canadensis, correspond to a 3,4-ketoisomerase, a pyridoxal 5'-phosphate aminotransferase, and an N-formyltransferase, respectively. For this investigation, five high-resolution X-ray structures were determined and the kinetic parameters for the isomerase and the N-formyltransferase were measured. Based on these data, we suggest that the unusual sugar, 3-formamido-3,6-dideoxy-d-glucose, will most likely be found in the O-antigen of H. canadensis. Whether N-formylated sugars found in the O-antigen contribute to virulence is presently unclear, but it is intriguing that they have been observed in such pathogens as Francisella tularensis, Mycobacterium tuberculosis, and Brucella melitensis. This article is protected by copyright. All rights reserved. Investigation of the enzymes required for the biosynthesis of an unusual formylated sugar in the emerging human pathogen Helicobacter canadensis.,Heisdorf CJ, Griffiths WA, Thoden JB, Holden HM Protein Sci. 2021 Aug 11. doi: 10.1002/pro.4169. PMID:34379357 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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