Sandbox 33

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Please do NOT make changes to this Sandbox. Sandboxes 30-60 are reserved for use by Biochemistry 410 & 412 at Messiah College taught by Dr. Hannah Tims during Fall 2012 and Spring 2013.

Adenylate Kinase

Drag the structure with the mouse to rotate

adenylate kinase 1ake

secondary structure the helices are shown in hot pink and the beta sheets are shown in a purple, other features??


Hydrogen Bonding

hbond

hbond


hydrogen bonds In the text around your green link, make sure you talk about the hydrogen bonds. Seeing the hydrogen bonds on the beta sheets should also help you to decide if they are parallel or anti-parallel, and you should comment on that as well. as dr tims again.

hydrophobic residues describe representation

hydrophilic residues describe representation polar and charged residues


waters write something about where the waters are, and arent

waters of hydration ligand highlighted brown


ligand contacts

When you add the green link to the top part of the page, make sure you say something about what kinds of side-chains interact with the non-hydrolysable substrate, and if that makes sense.


catalytic residues catalytic residues, check w/ dr tims to see if i have selected the rite ones