4g1v | pdb_00004g1v

X-ray structure of yeast flavohemoglobin

spinqualitylabelsall models 4g1v, resolution 2.10Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 4g1v is a 1 chain structure with sequence from Saccharomyces cerevisiae yjm789. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Ligands: FAD, HEM, K, NO2 Related: 1cqx, 3ozu, 3ozw, 3ozv Gene: YHB1, SCY_2125 (Saccharomyces cerevisiae YJM789) Resources: FirstGlance, OCA, RCSB, PDBsum Publication Abstract from PubMed Flavohemoglobins (flavoHbs) serve various microorganisms as the major protective enzymes against NO(*) - mediated toxicity. FlavoHbs dominantly function as a NO* dioxygenase (O(2) +NO--> NO(3) (-) ) the required electron being shuttled from NAD(P)H via FAD to the heme iron. The X-ray structures of the flavoHb from Saccharomyces cerevisae presented in complex with an unknown small ligand (Yhb) and with econazole (Yhb(E) ) at 2.1 A and 3.0 A resolutions, respectively, reveal a high architectural accordance between prokaryotic and eukaryotic family members. The active site is characterized by a proximal heme side with a strictly conserved histidine, glutamate and tyrosine triad and a highly variable distal heme side with helix shifts up to 10 A mainly dependent on the presence/absence and size of the bound ligand. In yeast flavoHb, the small heme iron ligand adjusts a catalytically productive active site geometry that reliably suggests the NO and O(2) binding site. O(2) is activated by its ligation to an electron-rich heme iron and a hydrogen bond to Tyr29 and Gln53. High active site similarities between eukaryotic Yhb and bacterial single-domain globins argue for identical biochemical reactions. Binding of the bulky econazole implies a large-scale induced-fit process concerning, in particular, an outwards shift of helices B and E to increase the active site pocket. Yeast Yhb and Ralstonia eutropha flavoHb both structurally studied in complex with econazole indicate conformational differences between both the inhibitors and the polypeptide primarily caused by stable binding of a phospholipid to the latter and by distinct loop D structures. (c) 2012 The Authors Journal compilation (c) 2012 FEBS. Active site analysis of yeast flavohemoglobin based on its structure with a small ligand or econazole.,Hammi EE, Warkentin E, Demmer U, Marzouki NM, Ermler U, Baciou L FEBS J. 2012 Oct 25. doi: 10.1111/febs.12043. PMID:23095020 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See Also Hemoglobin 3D structures

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