4waj | pdb_00004waj
H. influenzae beta-carbonic anhydase variant P48S/A49P
Structural highlights
Publication Abstract from PubMedHaemophilus influenzae beta-carbonic anhydrase (HICA) has been reverse-engineered in the allosteric site region to resemble the nonallosteric Pisum sativum enzyme in order to identify critical features of allostery and intersusbunit communication. Three variants (W39V/G41A, P48S/A49P, and W39V/G41A/P48S/A49P) were identified, through a comparison with a crystal structure of nonallosteric P. sativum beta-carbonic anhydrase (PSCA, PDB 1EKJ ), to potentially revert HICA to a nonallosteric enzyme. The W39V/G41A and P48S/A49P mutations decreased the apparent kcat/Km proton dependence from 4 to 2 and 1, respectively, increasing the overall maximal kcat/Km to 16 +/- 2 muM-1 s-1 (380% of wild type) and 17 +/- 3 muM-1 s-1 (405% of wild type). The pKa values of the metal-bound water molecule based on the pH-rate profile kinetics (8.32 +/- 0.04 for W39V/G41A and 8.3 +/- 0.1 for P48S/A49P) were also slightly higher than that for the wild-type enzyme (7.74 +/- 0.04). The P48S/A49P variant has lost all pH-rate cooperativity. The W39V/G41A/P48S/A49P variant's kinetics were unusual and were fit with a log-linear function with a slope 0.9 +/- 0.2. The crystal structure of the W39V/G41A variant revealed an active site very similar to the T-state wild-type oligomer with bicarbonate trapped in the escort site. By contrast, the X-ray crystal structure of a proline shift variant (P48S/A49P) reveals that it has adopted an active site conformation nearly identical to that of nonallosteric beta-carbonic anhydrase (R-state) for one chain, including a tight association with the dimer-exchanged N-terminal helices; the second chain in the asymmetric unit is associated in a biologically relevant oligomer, but it adopts a T-state conformation that is not capped by dimer-exchanged N-terminal helices. The hybrid R/T nature of HICA P48S/A49P structurally recapitulates the interruption of pH-rate cooperativity observed for this variant. Comparison of the conformations of the R and T chains of P48S/A49P suggests a new hypothesis to explain HICA allosteric communication that is mediated by the N-terminal helices and anion binding at the dimer interface. Allosteric Reversion of Haemophilus influenzae beta-Carbonic Anhydrase via a Proline Shift.,Hoffmann KM, Million-Perez HR, Merkhofer R, Nicholson H, Rowlett RS Biochemistry. 2014 Dec 24. PMID:25506786[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. References
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