4r0f | pdb_00004r0f

Structure of Lysozyme Dimer at 318K

spinqualitylabelsall models 4r0f, resolution 1.94Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 4r0f is a 2 chain structure with sequence from Gallus gallus. This structure supersedes the now removed PDB entry 3vfx. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Ligands: GOL Activity: Lysozyme, with EC number 3.2.1.17 Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum Function [LYSC_CHICK] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus. Publication Abstract from PubMed Here, we report results obtained during our experiments to visualize how heat transforms globular protein, lysozyme into building block of beta-amyloids. Light scattering experiments showed formation of lower order associated species around 50-70 degrees C followed by rapid cooperativity to beta-amyloid fibrils. Interestingly, crystallization drops set at higher temperatures either led to aggregates or spherulites. The latter possess an amorphous beta-fibril rich core with thin crystalline needles projecting outwards. Diffraction of the crystalline outgrowths revealed novel dimers and trimers of lysozyme where individual chains were similar to monomer with marginal gain in beta-sheet content. Importantly, analysis of Amide I stretching frequencies showed that protein loses its secondary structure at temperatures higher than where we obtained crystals followed by rapid gain in beta-sheet content. Interestingly, attempts to use the needles as seeds for more crystals led to "broom-like" fibril formations at the ends. Further, aggregation inhibitors like arginine and benzyl alcohol completely obliterated spherulites formation during crystallization. Refinement of crystals of lysozyme in presence of these molecules showed these small molecules bind to the interfaces of heat associated dimers and trimers. Overall our work concludes that heat induced weakly associated structures of lysozyme are the first step towards its amyloid formation. Characterization of heat induced spherulites of lysozyme reveals new insight on amyloid initiation.,Sharma P, Verma N, Singh PK, Korpole S, Ashish Sci Rep. 2016 Mar 1;6:22475. doi: 10.1038/srep22475. PMID:26926993 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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