4fvd | pdb_00004fvd

Crystal structure of EV71 2A proteinase C110A mutant in complex with substrate

spinqualitylabelsall models 4fvd, resolution 1.66Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 4fvd is a 2 chain structure with sequence from Ev-71. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Ligands: ZN Related: 4fvb, 4fve, 4fvh, 4fvi Gene: polyprotein (EV-71) Activity: Picornain 2A, with EC number 3.4.22.29 Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Function [A9XG43_9ENTO] Protein 2C associates with and induces structural rearrangements of intracellular membranes. It displays RNA-binding, nucleotide binding and NTPase activities (By similarity).[SAAS:SAAS000199_004_016611] Protein 3C is a cysteine protease that generates mature viral proteins from the precursor polyprotein. In addition to its proteolytic activity, it binds to viral RNA, and thus influences viral genome replication. RNA and substrate bind co-operatively to the protease (By similarity).[SAAS:SAAS000199_004_042266] RNA-directed RNA polymerase 3D-POL replicates genomic and antigenomic RNA by recognizing replications specific signals (By similarity).[SAAS:SAAS000199_004_010047] Publication Abstract from PubMed 2A proteinase (2Apro) is an enterovirally encoded cysteine protease that plays essential roles in both the processing of viral precursor polyprotein and the hijack of host cell translation and other processes in the virus life cycle. The crystallographic studies of 2Apro from enterovirus 71 and its interaction with the substrate are reported here. EV71 2Apro was comprised of an N-terminal domain of four-stranded antiparallel beta-sheet and a C-terminal domain of six-stranded antiparallel beta-barrel with a tightly bound zinc atom. Unlike other 2Apro structures, there is an open cleft across the surface of the protein in an open conformation. As demonstrated by the crystallographic studies and modeling of the complex structure, the open cleft could be fitted with the substrate. On comparison 2Apro of EV71 to those of the human rhinovirus 2 and coxsackievirus B4, the open conformation could be closed with a hinge motion in the bII2 and cII beta-strands. This was supported by molecular dynamic simulation. The structural variation among different 2Apro structures implicates a conformational flexibility in the substrate-binding cleft. The open structure provides an accessible framework for the design and development of therapeutics against the viral target. Conformational Plasticity of 2A Proteinase from Enterovirus 71.,Cai Q, Yameen M, Liu W, Gao Z, Li Y, Peng X, Cai Y, Wu C, Zheng Q, Li J, Lin T J Virol. 2013 Apr 24. PMID:23616646 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See Also Proteinase

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