3uao | pdb_00003uao

Structure and Catalytic Mechanism of the Vitamin B3 Degradative Enzyme Maleamate Amidohydrolase from Bordetalla bronchiseptica RB50

spinqualitylabelsall models 3uao, resolution 2.40Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 3uao is a 8 chain structure with sequence from "alcaligenes_bronchicanis"_(ferry_1911)_haupt_1935 "alcaligenes bronchicanis" (ferry 1911) haupt 1935. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Ligands: ACT NonStd Res: CSO Related: 1ilw, 1nba, 1yac, 1im5, 3gbc Gene: BB0275, BB1782 ("Alcaligenes bronchicanis" (Ferry 1911) Haupt 1935) Activity: Maleamate amidohydrolase, with EC number 3.5.1.107 Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Publication Abstract from PubMed The penultimate reaction in the oxidative degradation of nicotinate (vitamin B(3)) to fumarate in several species of aerobic bacteria is the hydrolytic deamination of maleamate to maleate, catalyzed by maleamate amidohydrolase (NicF). Although it has been considered a model system for bacterial degradation of N-heterocyclic compounds, only recently have gene clusters that encode the enzymes of this catabolic pathway been identified to allow detailed investigations concerning the structural basis of their mechanisms. Here, the Bb1774 gene from Bordetella bronchiseptica RB50, putatively annotated as nicF, has been cloned, and the recombinant enzyme, overexpressed and purified from Escherichia coli, is shown to catalyze efficiently the hydrolysis of maleamate to maleate and ammonium ion. Steady-state kinetic analysis of the reaction by isothermal titration calorimetry (ITC) established k(cat) and K(M) values (pH 7.5 and 25 degrees C) of 11.7 +/- 0.2 s(-1) and 128 +/- 6 muM, respectively. The observed K(D) of the NicF.maleate (E.P) complex, also measured by ITC, is approximated to be 3.8 +/- 0.4 mM. The crystal structure of NicF, determined at 2.4 A using molecular replacement, shows that the enzyme belongs to the cysteine hydrolase superfamily. The structure provides insight concerning the roles of potential catalytically important residues, most notably a conserved catalytic triad (Asp29, Lys117, and Cys150) observed in the proximity of a conserved non-proline cis-peptide bond within a small cavity that is likely the active site. On the basis of this structural information, the hydrolysis of maleamate is proposed to proceed by a nucleophilic addition-elimination sequence involving the thiolate side chain of Cys150. Structure and Catalytic Mechanism of Nicotinate (Vitamin B(3)) Degradative Enzyme Maleamate Amidohydrolase from Bordetella bronchiseptica RB50.,Kincaid VA, Sullivan ED, Klein RD, Noel JW, Rowlett RS, Snider MJ Biochemistry. 2012 Jan 10;51(1):545-54. Epub 2011 Dec 23. PMID:22214383 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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