5x7s | pdb_00005x7s

Crystal structure of Paenibacillus sp. 598K alpha-1,6-glucosyltransferase, terbium derivative

spinqualitylabelsall models 5x7s, resolution 2.40Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 5x7s is a 2 chain structure with sequence from Paenibacillus sp. 598k. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Ligands: CA, EDO, MES, MG, NI, SO4, TB Related: 5x7o, 5x7p, 5x7q, 5x7r, 5x7g, 5x7h Gene: 6gt31a (Paenibacillus sp. 598K) Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Publication Abstract from PubMed Paenibacillus sp. 598K alpha-1,6-glucosyltransferase (Ps6TG31A), a member of glycoside hydrolase family 31, catalyzes exo-alpha-glucohydrolysis and transglucosylation and produces alpha-1,6-glucosyl-alpha-glucosaccharides from alpha-glucan via its disproportionation activity. The crystal structure of Ps6TG31A was determined by an anomalous dispersion method using a terbium derivative. The monomeric Ps6TG31A consisted of one catalytic (beta/alpha)8-barrel domain and six small domains, one on the N-terminal and five on the C-terminal side. The structures of the enzyme complexed with maltohexaose, isomaltohexaose, and acarbose demonstrated that the ligands were observed in the catalytic cleft and the sugar-binding sites of four beta-domains. The catalytic site was structured by a glucose-binding pocket and an aglycon-binding cleft built by two sidewalls. The bound acarbose was located with its non-reducing end pseudosugar docked in the pocket, and the other moieties along one sidewall serving three subsites for the alpha-1,4-glucan. The bound isomaltooligosaccharide was found on the opposite sidewall, which provided the space for the acceptor molecule to be positioned for attack of the catalytic intermediate covalent complex during transglucosylation. The N-terminal domain recognized the alpha-1,4-glucan in a surface-binding mode. Two of the five C-terminal domains belong to the carbohydrate-binding modules family 35 and one to family 61. The sugar complex structures indicated that the first family 35 module preferred alpha-1,6-glucan, whereas the second family 35 module and family 61 module preferred alpha-1,4-glucan. Ps6TG31A appears to have enhanced transglucosylation activity facilitated by its carbohydrate-binding modules and substrate-binding cleft that positions the substrate and acceptor sugar for the transglucosylation. Carbohydrate-binding architecture of the multi-modular alpha-1,6-glucosyltransferase from Paenibacillus sp. 598K, which produces alpha-1,6-glucosyl-alpha-glucosaccharides from starch.,Fujimoto Z, Suzuki N, Kishine N, Ichinose H, Momma M, Kimura A, Funane K Biochem J. 2017 Aug 7;474(16):2763-2778. doi: 10.1042/BCJ20170152. PMID:28698247 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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