2mqe | pdb_00002mqe
Solution structure of Escherichia coli Outer membrane protein A C-terminal domain
Structural highlights
Publication Abstract from PubMedGram-negative bacteria such as Escherichia coli are surrounded by two membranes with a thin peptidoglycan (PG)-layer located in between them in the periplasmic space. The outer membrane protein A (OmpA) is a 325-residue protein and it is the major protein component of the outer membrane of E. coli. Previous structure determinations have focused on the N-terminal fragment (residues 1-171) of OmpA, which forms an eight stranded transmembrane beta-barrel in the outer membrane. Consequently it was suggested that OmpA is composed of two independently folded domains in which the N-terminal beta-barrel traverses the outer membrane and the C-terminal domain (residues 180-325) adopts a folded structure in the periplasmic space. However, some reports have proposed that full-length OmpA can instead refold in a temperature dependent manner into a single domain forming a larger transmembrane pore. Here, we have determined the NMR solution structure of the C-terminal periplasmic domain of E. coli OmpA (OmpA180-325). Our structure reveals that the C-terminal domain folds independently into a stable globular structure that is homologous to the previously reported PG-associated domain of Neisseria meningitides RmpM. Our results lend credence to the two domain structure model and a PG-binding function for OmpA, and we could indeed localize the PG-binding site on the protein through NMR chemical shift perturbation experiments. On the other hand, we found no evidence for binding of OmpA180-325 with the TonB protein. In addition, we have also expressed and purified full-length OmpA (OmpA1-325) to study the structure of the full-length protein in micelles and nanodiscs by NMR spectroscopy. In both membrane mimetic environments, the recombinant OmpA maintains its two domain structure that is connected through a flexible linker. A series of temperature-dependent HSQC experiments and relaxation dispersion NMR experiments detected structural destabilization in the bulge region of the periplasmic domain of OmpA above physiological temperatures, which may induce dimerization and play a role in triggering the previously reported larger pore formation. The periplasmic domain of Escherichia coli outer membrane protein A can undergo a localized temperature dependent structural transition.,Ishida H, Garcia-Herrero A, Vogel HJ Biochim Biophys Acta. 2014 Aug 15. pii: S0005-2736(14)00290-9. doi:, 10.1016/j.bbamem.2014.08.008. PMID:25135663[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. References
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