5yu2 | pdb_00005yu2
Structure of Ribonuclease YabJ
Structural highlights
Publication Abstract from PubMedThe characteristic fold of a protein is the decisive factor for its biological function. However, small structural changes to amino acids can also affect their function, for example in the case of post- translational modification (PTM). Many different types of PTMs are known, but for some, including chlorination, studies elucidating their importance are limited. A recent study revealed that the YjgF family member RidA from Escherichia coli shows chaperone activity after chlorination. Thus, to identify the functional and structural difference of RidA upon chlorination, we studied a RidA homologue from Staphylococcus aureus : YabJ. The overall structure of S. aureus YabJ was similar to other members of the YjgF family, showing deep pockets on its surface, and the residues composing the pockets were well conserved. S. aureus YabJ was highly stable after chlorination and the chlorinated state is reversible by treatment with DTT. However, it shows no chaperone activity after chlorination. Instead, YabJ from S. aureus shows chlorination-induced ribonuclease activity, and the activity is diminished after subsequent reduction. Even though the yabJ genes from Staphylococcus and Bacillus are clustered with regulators that are expected to code nucleic acid-interacting proteins, the nucleic acid-related activity of bacterial RidA has not been identified before. From our study, we revealed the structure and function of S. aureus YabJ as a novel chlorination-activated ribonuclease. This study will contribute to an in-depth understanding of chlorination as a post-translational modification. A novel chlorination-induced ribonuclease YabJ from Staphylococcus aureus.,Kim HJ, Kwon AR, Lee BJ Biosci Rep. 2018 Sep 10. pii: BSR20180768. doi: 10.1042/BSR20180768. PMID:30201692[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. References
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