Nanog
Nanog (Human homeobox protein)
NANOG is a transcription factor, an upstream regulator in early mammalian development and a key determinant to maintain the pluripotency of embryonic stem cells. It’s named in reference to the Irish Legend of Oisín and Niamh and the Land of Eternal Youth, beauty, health and joy - Tír Na nÓg. [1] NANOG regulates the expression of hundreds of genes by binding their promoter elements. The murine Nanog homeodomain (HD) is capable of binding to interact with DNA elements derived from the Tcf3 promoter. [2] The human NANOG protein coded by the NANOG1 gene, consists of 305 amino acids, molecular weight of 34.6 kDa and possesses 3 functional domains: the N-terminal domain, which contains 94 amino acids, is rich in Ser and Thr and acidic residues found in typical transactivators. The C-terminal domain contains 151 amino acids, it has a tryptophan repeat (WR) domain in which every fifth residue is a tryptophan. Last but not least, the conserved homeodomain motif has 60 amino acids. The homeodomain region facilitates not only DNA binding, optimally to the DNA consensus sequence 5'-TAAT[GT][GT]-3' or 5'-[CG][GA][CG]C[GC]ATTAN[GC]-3' [3], but also gene regulation and interaction with other proteins. The human Nanog 1 gene is located on chromosome 12, and the mRNA contains a 915 bp open reading frame (ORF) with 4 exons and 3 introns. [4][1]. FunctionThe expression of Nanog is detectable at embryonic day 6. It is expressed in the proximal epiblast in a region presumed to be the primitive streak, its expression extends distally as the streak elongates during gastrulation and remains restricted to epiblast. Nanog is vital to maintain pluripotency, it is very much needed, since nanog-deficient inner cell mass from the blastocyst could not generate epiblast and only produce parietal endoderm-like cells. Meanwhile, Nanog-deficient embryonic stem cells lost pluripotency and differentiated into extraembryonic endoderm lineage. [5]
DiseaseNanog as many pluripotency factors can be disregulated and end up contributing to protumorigenic proporties. These transcription factors are frequently detected in malignant tumours, where there are Cancer Stem Cells (CSC´s), wich recapitulate the expression of Embrionic Stem Cell associated proteins. Nanog is detected in a wide variety of cancers alongside other very well known transcription factor ,such as the Yamanaka Factors, Oct4 and Sox2 [9]. Nanog expression in tumours has been correlated with a worse prognosis, metastatic properties, tissue invasiveness and chemotherapy resistance [6, 7, 8]. A lot of studies have been done to unravel network that pluripotency associated proteins maintain in cancer cells, and yet the link between Nanog and other transcription factors have been stablished, the origin of that expression in cancer cells is yet poorly understood.
Structural highlightsThe struture of Nanog consists in 3 alpha helices linked to each other by loops. The so called alpha-helix1 and alpha-helix 3 play a role into binding of the protein to DNA. The alpha-helix1, localized in the N-terminal arm, binds to DNA through minor grooves, whereas alpha-helix3 binds major grooves in DNA and is considered the recognition helix, due to it´s extensive DNA contact sufarce. Alpha helices 1 and 2 as antiparallel This is a sample scene created with SAT to color by Group, and another to make a transparent representation of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.
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