4zdn | pdb_00004zdn

Streptomyces platensis isomigrastatin ketosynthase domain MgsF KS4

spinqualitylabelsall models 4zdn, resolution 2.51Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 4zdn is a 1 chain structure with sequence from "streptomyces_platensis_subsp._rosaceus"_karwowski_et_al._1994 "streptomyces platensis subsp. rosaceus" karwowski et al. 1994. This structure supersedes the now removed PDB entry 4tl2. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Ligands: CL, EPE NonStd Res: MSE Related: 4wky, 4qyr, 4tkt, 4oqj, 4ope, 4opf Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Publication Abstract from PubMed Acyltransferase (AT)-less type I polyketide synthases (PKSs) break the type I PKS paradigm. They lack the integrated AT domains within their modules and instead use a discrete AT that acts in trans, whereas a type I PKS module minimally contains AT, acyl carrier protein (ACP), and ketosynthase (KS) domains. Structures of canonical type I PKS KS-AT didomains reveal structured linkers that connect the two domains. AT-less type I PKS KSs have remnants of these linkers, which have been hypothesized to be AT docking domains. Natural products produced by AT-less type I PKSs are very complex because of an increased representation of unique modifying domains. AT-less type I PKS KSs possess substrate specificity and fall into phylogenetic clades that correlate with their substrates, whereas canonical type I PKS KSs are monophyletic. We have solved crystal structures of seven AT-less type I PKS KS domains that represent various sequence clusters, revealing insight into the large structural and subtle amino acid residue differences that lead to unique active site topologies and substrate specificities. One set of structures represents a larger group of KS domains from both canonical and AT-less type I PKSs that accept amino acid-containing substrates. One structure has a partial AT-domain, revealing the structural consequences of a type I PKS KS evolving into an AT-less type I PKS KS. These structures highlight the structural diversity within the AT-less type I PKS KS family, and most important, provide a unique opportunity to study the molecular evolution of substrate specificity within the type I PKSs. Structural and evolutionary relationships of "AT-less" type I polyketide synthase ketosynthases.,Lohman JR, Ma M, Osipiuk J, Nocek B, Kim Y, Chang C, Cuff M, Mack J, Bigelow L, Li H, Endres M, Babnigg G, Joachimiak A, Phillips GN Jr, Shen B Proc Natl Acad Sci U S A. 2015 Oct 13;112(41):12693-8. doi:, 10.1073/pnas.1515460112. Epub 2015 Sep 29. PMID:26420866 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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