5awh | pdb_00005awh

Rhodobacter sphaeroides Argonaute in complex with guide RNA/target DNA heteroduplex

spinqualitylabelsall models 5awh, resolution 2.00Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 5awh is a 6 chain structure with sequence from Rhos5. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Ligands: MG Gene: Rsph17025_3694 (RHOS5) Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Publication Abstract from PubMed Argonaute proteins are key players in the gene silencing mechanisms mediated by small nucleic acids in all domains of life from bacteria to eukaryotes. However, little is known about the Argonaute protein that recognizes guide RNA/target DNA. Here, we determine the 2 A crystal structure of Rhodobacter sphaeroides Argonaute (RsAgo) in a complex with 18-nucleotide guide RNA and its complementary target DNA. The heteroduplex maintains Watson-Crick base-pairing even in the 3'-region of the guide RNA between the N-terminal and PIWI domains, suggesting a recognition mode by RsAgo for stable interaction with the target strand. In addition, the MID/PIWI interface of RsAgo has a system that specifically recognizes the 5' base-U of the guide RNA, and the duplex-recognition loop of the PAZ domain is important for the DNA silencing activity. Furthermore, we show that Argonaute discriminates the nucleic acid type (RNA/DNA) by recognition of the duplex structure of the seed region. Structural basis for the recognition of guide RNA and target DNA heteroduplex by Argonaute.,Miyoshi T, Ito K, Murakami R, Uchiumi T Nat Commun. 2016 Jun 21;7:11846. doi: 10.1038/ncomms11846. PMID:27325485 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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