Glucuronidase

spinqualitylabelsall models β-glucuronidase complex with glucouronic acid, glycerol and PO4 ion (PDB code 3vnz). Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D This tutorial illustrates the quaternary structures of the human and E. coli β-glucuronidase enzyme. Function β-glucuronidase is a ubiquitous enzyme that catalyzes the hydrolysis of a glucuronide moiety from a variety of substrates. This enzyme is present throughout biological systems, including bacteria up through humans. α-glucuronidase catalyzes the conversion of α-D-glucuronoside to alcohol and D-glucuronate. Relevance The E. coli form of β-glucuronidase (overall structure, PDB ID 3lpf) is associated with the side effects seen with administration of the cancer chemotherapy drug CPT-11. This drug gets converted to SN38, a topoisomerase inhibitor, by the liver. The body adds a glucuronide group to this molecule (now SN38-G) to mark it for elimination, which partially occurs through the intestine. Once in the intestine, bacterial β-glucuronidase cleaves the glucuronide from the SN38-G, releasing the SN38 into the intestinal lumen. The released SN38 prevents cell division, compromising the epithelial lining of the intestines, a painful and dangerous side-effect of CPT-11 administration. Selective inhibition of bacterial β-glucuronidase is desired to alleviate this side-effect of CPT-11 treatment, hopefully without inhibiting the human form of the enzyme. Disease Deficiencies in the human form of β-glucuronidase (overall structure, PDB ID 3hn3) is associated with a disease known as Sly Syndrome (AKA Mucopolysaccharidosis VII -- MPS VII). This disease is characterized by mental retardation, short stature, macrocephaly, and enlarged joints. As is commonly seen with genetic disorders, patients with this disease present a spectrum of symptom severity, but the disease is always ultimately fatal. Structural highlights The structure of E. coli β-glucuronidase contains 4 identical subunits (homotetramer). The structure of the enzyme contains both α-helix (blue) and β-sheet (yellow) forms of secondary structure, with the β-sheets arranged in β-barrels in an immunoglobulin-like fold. The catalytic pocket of BGUS contains two catalytic Glu residues. 3D Structures of glucuronisidase Glucuronisidase 3D structures

3D Structures of glucuronisidase

Updated on 11-July-2019

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• α-D-glucuronidase
  • 3lpf – PcAGUS – Pseudomonas cellulosa
    
  • 3hn3, Glucuronisidase 3D structures – GsAGUS – Geobacillus stearothermophilus
    
  • 1mqr – GsAGUS (mutant)
    
  • 4c90, 4c91 – AGUS – Bacteroides ovatus
    
  • 5c70 – AoAGUS – Aspergillus oryzae
    
  • 6ncy – FsAGUS – Fusicatenibacter saccharivorans
    
• α-D-glucuronidase binary complex
  • 1gqj – PcAGUS + xylobiose
    
  • 1gqk – PcAGUS + glucuronic acid
    
  • 1mqq – GsAGUS + glucuronic acid
    
  • 1k9e – GsAGUS (mutant) + methyl-glucuronic acid
    
  • 1k9f – GsAGUS (mutant) + aldotetraouronic acid
    
  • 1h41 – PcAGUS (mutant) + aldotriuronic acid
    
  • 5c71 – AoAGUS + glycyrrhetinic acid monoglucuronide
    
  • 6ncz – FsAGUS + glucuronide derivative
    
• α-D-glucuronidase ternary complex
  • 1gql – AGUS + glucuronic acid + xylotriose – Cellvibrio japonicus
    
  • 1l8n – GsAGUS (mutant) + methyl-glucuronic acid + xylotriose
    
• β-glucuronidase

• • 1bhg, 3hn3 – hBGUS – human
    
  • 3k46 – EcBGUS – Escherichia coli
    
  • 3k4a – EcBGUS (mutant)
    
  • 3vny – AcBGUS – Acidobacterium capsulatum
    
  • 4jkk, 4jkl – BGUS – Streptococcus agalactiae
    
  • 6mvg, 6ec6, 5z18 – RgBGUS – Ruminococcus gnavus
    
  • 6eca – BGUS – Lactobacillus rhamnosus
    
  • 6d7j – BGUS – Parabacterioides merdae
    
• β-glucuronidase complex
  • 3vnz – AcBGUS + glucuronic acid
    
  • 3vo0 – AcBGUS + glucuronic acid derivative
    
  • 5g0m, 5g0q – AcBGUS + acyl cyclophellitol aziridine
    
  • 5l77 – AcBGUS (mutant) + probe
    
  • 3k4d – EcBGUS + glucaro-D-lactam
    
  • 3lpf, 3lpg, 4jhz, 5czk – EcBGUS + inhibitor
    
  • 4jkm – CpBGUS + MBP – Clostridium perfringens
    
  • 6cxs – CpBGUS + MBP + inhibitor
    
  • 6d4o – BGUS + glucuronic acid derivative – Eubacterium eligens
    
  • 5z19 – RgBGUS (mutant) + uronic isofagomine
    

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