Integrin

spinqualitylabelsall models Structure of human integrin CD11a I domain dimer complex with Mg+2 (light green) and Cl- (dark green) ions (PDB entry 1zoo) Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Function Integrins (IG) are receptors which mediate the attachment between cells and between cells and the extracellular matrix. They are involved in cellular signaling and cell cycle. IGs contain α and β chain. IG subunits span the cell membrane. Both subunits bind divalent cations some of which bind the ligands which interact with IG. Some IGs contain an insertion domain named I domain. For more details see Molecular Playground/IntegrinBeta1. For some details on the interaction of a targeting peptide with integrin see Molecular Playground/Targeting Peptide. Disease Defective integrin is the cause of the skin disease epidermolysis bullosa, of congenital muscular dystrophy. Overexpression of integrin is correlated with some types of cancer and enhanced bone resorption in osteoporosis. Defective integrin is involved in periodontal diseases. Structural highlights The interactions of integrin with ligands are dependent on the presence of divalent ions. Mg/Cl coordination site. Water molecules shown as red spheres. 3D structures of integrin Integrin 3D structures

3D structures of integrin

Updated on 29-August-2019

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• IG CR3
  • Molecular Playground/IntegrinBeta1 – hIG I domain + Mg – human
    
  • Molecular Playground/Targeting Peptide - hIG I domain + Mn
    
• IG CD11a or IG α-L
  • Integrin 3D structures - hIG I domain + Mn
    
  • 1zon - hIG I domain
    
  • 1zoo, 1zop, 3f74 - hIG I domain + Mg
    
  • 1mq9 - hIG I domain (mutant) + Mn
    
  • 1mjn - hIG I domain (mutant) + Mg
    
  • 1mqa - hIG I domain (mutant)
    
  • 2k8o – hIG cytoplasmic domain (mutant) – NMR
    
• IG CD11a complexes
  • 1cqp - hIG I domain + lovastatin + Mg
    
  • 1mq8, 3bn3, 3tcx - hIG I domain (mutant) + intracellular adhesion molecule + Mg
    
  • 1t0p - hIG I domain + intracellular adhesion molecule-3 + Mg
    
  • 1rd4, 2ica, 3bqm, 3bqn, 3e2m - hIG I domain + inhibitor
    
  • 2o7n, 3m6f - hIG I domain + antagonist
    
  • 1xdd, 1xdg, 1xuo - hIG I domain + inhibitor + Mg
    
  • 4ixd - hIG I domain + activator + Mg
    
  • 3f78 - hIG I domain + anesthetic + Mg
    
  • 3eoa, 3eob - hIG I domain + antibody
    
  • 3hi6 - hIG I domain (mutant) + antibody + Mn
    
• IG CD11b
  • 1bho - hIG I domain + Mg
    
  • 1bhq - hIG I domain + Cd
    
  • 1m1u - hIG I domain (mutant) + Ca
    
  • 1n9z - hIG I domain (mutant) + Mg
    
  • 1idn, 1na5 - hIG I domain
    
  • 1mf7 - hIG I domain (mutant)
• IG CD11c
  • 1n3y - hIG I domain (mutant)
• IG α-1 (CD49a)
  • 1ck4 - rIG I domain – rat
    
  • 4a0q - hIG I domain (mutant) + Mg
    
  • 2l8s - hIG transmembrane domain – NMR
    
  • 5hgj - hIG VWFA domain
    
  • 1mhp - rIG I domain (mutant) + antibody + Mn
    
  • 2b2x - rIG I domain (mutant) + antibody + Mg
    
  • 2m32 - hIG I domain + collagen peptide
    
• IG α-2 (CD49b)
  • 4bj3, 5e6x, 5e6v - hIG I domain
    
  • 1dzi, 4bj3 - hIG I domain + collagen peptide
    
  • 1v7p - hIG I domain (mutant) + EMS16 + Mn
    
  • 5thp, 6nd8, 6nd9, 6nda, 6ndb, 6ndc, 6ndd, 6nde, 6ndf, 6ndg, 6ndh - hIG residues 170-366 + rhodocetin
    
• IG α-2b
  • 2k1a - hIG transmembrane domain – NMR
    
• IG α-1 β-1 (CD49a-CD49b)
  • 1qc5, 1qcy - hIG I domain (mutant) + Mg
    
  • 1pt6 - hIG I domain + Mg
    
• IG α-2 (CD49b) β
  • 5hj2 - hIG I domain
    
  • 1aox - hIG I domain (mutant) + Mg
    
  • 2k1a - hIG transmembrane domain – NMR
    
• IG α-2b β-3 (CD61)
  • 1kup, 1kuz – hIG proximal domain – NMR
    
  • 1m8o - hIG cytoplasmic domain – NMR
    
  • 4cak – hIG – Cryo-EM
    
  • 2k9j, 2knc - hIG transmembrane domain – NMR
    
  • 1tye, 3fcu, 3fcs – hIG + Mg
    
  • 3fc3 – hIG (mutant) + Mg
    
  • 2vc2, 2vdk, 2vdl, 3nid, 3nif, 3nig, 3zdx, 3zdy, 3zdz, 3ze0, 3ze1, 3ze2, 5hdb – hIG headpiece + antibody + Mg
    
  • 4z7q, 4z7o, 4z7n – hIG headpiece + antibody + Mg + tetrapeptide
    
  • 2vdm, 2vdn, 3t3m, 3t3p – hIG headpiece + antibody + antagonist + Mg
    
  • 2vdo, 2vdp, 2vdq, 2vdr – hIG headpiece + antibody + fibrinogen peptide + Mg
    
• IG α-4

• • 4irz - hIG + antibody
    
• IG α-4 (CD49d) β-7
  • 3v4p - hIG headpiece (mutant) + antibody + Mg
    
  • 3v4v - hIG headpiece (mutant) + antibody + inhibitor + Mg
    
• IG α-5 (CD49e) β-1 (CD29)
  • 4wjk - hIG headpiece (mutant) + Mg
    
  • 4wk0, 4wk2, 4wk4 - hIG headpiece (mutant) + peptide + Mg
    
  • 3vi3 - hIG headpiece + antibody + Mg
    
  • 3vi4 - hIG headpiece + antibody + peptide + Mg
    
• IG α-5 (CD49e) β-3 (CD61) ectodomain
  • 3ije, 1m1x, 4g1e, 4g1m, 1u8c – hIG + cation
    
  • 4mmx, 4mmy, 4mmz - hIG + Mn + fibronectin domain 10
    
  • 4o02, 6avu, 6avr, 6avq - hIG + antibody
    
  • 1jv2 - hIG + platelet membrane glycoprotein IIIA + Ca
    
  • 1l5g - hIG + tripeptide + Mn
    
• IG α-5 β-6
  • 4um8 – hIG headpiece (mutant) + Ni
    
  • 5ffg – hIG headpiece + Ca
    
  • 4um9 – hIG headpiece (mutant) + Mg + transforming growth factor β 3
    
  • 5neu, 5net, 5ner, 5nem – hIG headpiece + foot-and-mouth virus – Cryo EM
    
  • 5ffo – hIG headpiece + TGF-beta-1
    
• IG α-L
  • 4ixd – hIG I domain
    
  • 5e6s, 5e6r – hIG AI, headpiece,pocket domains + Mg
    
  • 2m3e – hIG transmembrane domain - NMR
    
• IG α-L β-2
  • 5e6u – hIG headpiece (mutant) + Ni
    
• IG α-M
  • 3q3g, 3qa3 – hIG + antibody
    
  • 4m76 – hIG + complement C3
    
  • 2lke, 2lkj – hIG cytoplasmic domain – NMR
    
  • 4xw2 – hIG + simvastatin
    
• IG α-V β-8
  • 6djp – hIG + antibody – Cryo EM
    
• IG α-X
  • 2luv – hIG cytoplasmic domain – NMR
    
• IG α-X β-2 (CD18)
  • 3k6s, 3k71, 3k72, 5es4 – hIG + Mg
    
  • 4neh, 4nen – hIG (mutant) + Mg
    
• IG β-1D
  • 3g9w – hIG cytoplasmic tail + talin 2 F2-F3 domain
    
• IG β-2 (CD18)
  • 2p26, 2p28, 5e6w – hIG phe2 + phe3 domains
    
  • 1yuk – hIG chain A PSI domain + chain B I-EGF domain
    
  • 5zaz – hIG transmembrane domain - NMR
    
• IG β-3 (CD61)
  • 1s4x, 2kv9, 2ljd, 2lje, 2ljf – hIG cytoplasmic domain – NMR
    
  • 2rmz, 2rn0 – hIG transmembrane domain – NMR
    
  • 2l91 - hIG transmembrane domain (mutant) – NMR
    
  • 2l1c – hIG cytoplasmic tail + SHC
    
  • 2mtp – hIG cytoplasmic tail (mutant) + hIG α-2 β peptide+ filamin rod domain
    
• IG β-4 (CD104; Gp150)
  • 2f7q, 3f7r, 1qg3, 3f7q, 4wtw, 4wtx - hIG fibronectin type III domain
    
  • 2yrz – hIG fibronectin type III domain – NMR
    
  • 3f7p, 4q58 - hIG fibronectin type III domain + plectin-1
    
  • 6gvl - hIG fibronectin type III domain + dystonin
    
  • 6gvk - hIG fibronectin type III domain (mutant) + dystonin
    
  • 3fq4, 3fso, 3h6a – hIG Calx-β domain
    
  • 6hyf - rIG fibronectin type III domain
    
• IG β-7
  • 2brq, 2jf1 – hIG cytoplasmic tail + filamin rod domain
    

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Michal Harel, Alexander Berchansky