6nz6 | pdb_00006nz6
YcjX-GDP (type II)
Structural highlights
Publication Abstract from PubMedStress proteins promote cell survival by monitoring protein homeostasis in cells and organelles. YcjX is a conserved protein of unknown function, which is highly upregulated in response to acute and chronic stress. Notably, heat shock induction of ycjX exceeded even levels observed for major stress-induced chaperones, including GroEL, ClpB, and HtpG, which use ATP as energy source. YcjX features a Walker-type nucleotide-binding domain indicating that YcjX might function as a molecular chaperone. Here, we present the first crystal structure of YcjX from Shewanella oneidensis solved at 1.9-A resolution by SAD phasing. We show that YcjX is a GTP-binding protein that shares at its core the canonical alpha-beta domain of p21(ras) (Ras). However, unlike Ras, YcjX features several unique insertions, including an entirely alpha-helical domain not previously observed in Ras-like GTPases. We note that this helical domain is reminiscent of a similar domain in the Galpha subunit of heterotrimeric G proteins, supporting a potential role for YcjX as a signal transducer of stress responses. To elucidate the mechanism of GTP hydrolysis, we determined crystal structures of YcjX bound to GDP and GDPCP, respectively, which crystallized in three different nucleotide switch conformations. Supported by targeted mutagenesis experiments, we show that YcjX utilizes a non-canonical switch 2' motif not previously observed in Ras-like GTPases. Together, our structures provide atomic snapshots of YcjX in different functional states, illustrating the structural determinants for stress signaling. Crystal Structure of the YcjX Stress Protein Reveals a Ras-Like GTP-Binding Protein.,Tsai JT, Sung N, Lee J, Chang C, Lee S, Tsai FTF J Mol Biol. 2019 Aug 9;431(17):3179-3190. doi: 10.1016/j.jmb.2019.06.006. Epub, 2019 Jun 14. PMID:31202886[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. References
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