5dhd | pdb_00005dhd

Crystal structure of ChBD2 from Thermococcus kodakarensis KOD1

spinqualitylabelsall models 5dhd, resolution 1.27Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 5dhd is a 1 chain structure with sequence from Pyrococcus kodakaraensis (strain kod1). Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Ligands: PE3, SO4 Related: 5dhe Gene: Pk-chiA, TK1765 (Pyrococcus kodakaraensis (strain KOD1)) Activity: Chitinase, with EC number 3.2.1.14 Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Publication Abstract from PubMed Chitinase from T. kodakarensis (TkChiA) catalyzes the hydrolysis of chitin. The enzyme consists of two catalytic and three binding domains (ChBD1, ChBD2 and ChBD3). ChBD2 and ChBD3 can bind to not only chitin but also cellulose. In both domains, the intervals of the side chains of the three tryptophan residues, which are located on the molecular surface, correspond to twice the length of the lattice of the chitin. A binding model with crystalline chitin implies that the tryptophan residues and a glutamate residue interact with the hexose ring by CH-pi interactions and the amide group by a hydrogen bond, respectively. Crystal structures of chitin binding domains of chitinase from Thermococcus kodakarensis KOD1.,Hanazono Y, Takeda K, Niwa S, Hibi M, Takahashi N, Kanai T, Atomi H, Miki K FEBS Lett. 2016 Jan;590(2):298-304. doi: 10.1002/1873-3468.12055. Epub 2016 Jan, 20. PMID:26823175 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See Also Chitinase 3D structures

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