5dbu | pdb_00005dbu

Crystal structure of 2-deoxyribose-5-phosphate aldolase (1-220) from Streptococcus suis

spinqualitylabelsall models 5dbu, resolution 2.80Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 5dbu is a 13 chain structure with sequence from Strgz. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Related: 5dbt Gene: deoC (STRGZ) Activity: Deoxyribose-phosphate aldolase, with EC number 4.1.2.4 Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Function [D5AHU8_STRGZ] Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5-phosphate.[HAMAP-Rule:MF_00114][SAAS:SAAS00281332] Publication Abstract from PubMed 2-deoxyribose-5-phosphate aldolase (DERA) is a class I aldolase that catalyzes aldol condensation of two aldehydes in the active site, which is particularly germane in drug manufacture. Structural and biochemical studies have shown that the active site of DERA is typically loosely packed and displays broader substrate specificity despite sharing conserved folding architecture with other aldolases. The most distinctive structural feature of DERA compared to other aldolases is short and flexible C-terminal region. This region is also responsible for substrate recognition. Therefore, substrate tolerance may be related to the C-terminal structural features of DERA. Here, we determined the crystal structures of full length and C-terminal truncated DERA from Streptococcus suis (SsDERA). In common, both contained the typical (alpha/beta)8 TIM-barrel fold of class I aldolases. Surprisingly, C-terminal truncation resulting in missing the last alpha9 and beta8 secondary elements, allowed DERA to maintain activity comparable to the fulllength enzyme. Specifically, Arg186 and Ser205 residues at the C-terminus appeared mutually supplemental or less indispensible for substrate phosphate moiety recognition. Our results suggest that DERA might adopt a shorter C-terminal region than conventional aldolases during evolution pathway, resulting in a broader range of substrate tolerance through active site flexibility. Structural insight for substrate tolerance to 2-deoxyribose-5-phosphate aldolase from the pathogen Streptococcus suis.,Cao TP, Kim JS, Woo MH, Choi JM, Jun Y, Lee KH, Lee SH J Microbiol. 2016 Apr;54(4):311-21. doi: 10.1007/s12275-016-6029-4. Epub 2016 Apr, 1. PMID:27033207 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See Also Aldolase 3D structures

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