Histone 3D structures
From Proteopedia
Revision as of 10:27, 19 August 2020 by Michal Harel (talk | contribs)
3D Structures of histone
Updated on 19-August-2020
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- Histone
- 2xd7, 1zr3, 1zr5, 2fxk – hH2A macro domain – human
- 4cay – hH2A +H2B
- 3iid, 3iif – hH2A macro domain + ADP-ribose
- 1yd9 – H2A macro domain – rat
- 1ghc – cH1 – chicken - NMR
- 1hst – cH5
- 1yqa – yH1 (mutant) – yeast – NMR
- 1uss, 1ust, 1uhm – yH1 globular domain - NMR
- 1ku5 – HPHA – Pyrococcus horikoshii
- 1b67, 1b6w, 1a7w, 1hta – MfHMFA – Methanococcus fervidus
- 1bfm – MfHB - NMR
- 1f1e – H – Methanopyrus kandleri
- 2g9a, 2g99, 2h13 – H3 + WD-repeat protein
- 1pfb – H3 + polycomb protein – Strongylocentrus purpuratus
- 2xd7, 1zr3, 1zr5, 2fxk – hH2A macro domain – human
- Nucleosome core
- 6n89, 6n88 – hH1 + importin – Cryo EM
- 6h8p – hH1 + histone-lysine methyltransferase
- 3r45 - hH4 + H3-like centromeric protein + Holliday junction recognition protein
- 3nqj, 3nqu - hH4 + H3-like centromeric protein
- 5vey - hH2A + H2B + polyubiquitin
- 5fug - hH2A + H2B + YL-1
- 4nft - hH2A + H2B + ANP32E
- 6kbb - hH2A + H2B + SWR-complex protein
- 6miq, 6mio, 6min – hH3 + TFIID
- 6mim, 6mil – hH3 + AF9
- 5ja4, 5bnv – hH3.3 + H4 + TONSL + MCM2
- 5bo0, 5bnx – hH3.2 + H4 + ASF1B + MCM2
- 6mlc - hH4 + histone-lysine methyltransferase
- 6qxz – hH3.3 + histone-lysine methyltransferase - NMR
- 3qzs, 3qzt – XlH4 + nucleosome-remodeling factor subunit BPTF – Xenopus laevis
- 6o7g - XlH4 + histone-lysine methyltransferase – NMR
- 4h9n, 4h9o, 4h9p, 4h9q, 4h9r, 4h9s, 4hga - XlH3.3 (mutant) + H4 + death domain-associated protein 6
- 5kdm - XlH3.3 + H4 + death domain-associated protein + tegument protein
- 2io5 - XlH3.1 + H4 + anti-silencing protein
- 6k01, 6w4l - XlH2A + H2B
- 5g2e, 6k00 - XlH2A + H2B + NAP1
- 6n1z - XlH2A + H2B + importin
- 5bsa, 5bs7 – XlH3.2 + H4 + SPT2
- 6o22 - XlH3.2 + H4 + RTT109 + ASF1
- 4eo5 - XlH3.2 (mutant) + H4 (mutant) + histone chaperone ASF1
- 4ld9 - XlH3.2 + H4 + H2A + H2B + widom sequence reverse + SIR3
- 2xql, 3c9k - cH3.2 + H4 + H2A + H2B – Cryo EM
- 6k03 - CeH2A + H2B – Caenorhabditis elegans
- 6k09, 6k0c - CeH2A + H2B + NAP1
- 2l5a - yH4/H3-like centromeric protein/SCM3
- 2jss - yH2A/H2B + CHZ1 – NMR
- 4wnn – yH32A + H2B + SPT2
- 2hue - yH3 + H4 + anti-silencing protein
- 4uuz – DmH3 + H4 + DNA replication licensing factor – Drosophila melanogaster
- 2yfv, 2yfw - H4 + H3-like centromeric protein + SCM3 – Kluyveromyces lactis
- 6n89, 6n88 – hH1 + importin – Cryo EM
- Human nucleosome core + DNA
- 3an2, 4x23 – hH4 + H2A + H2B + H3-like centromeric protein + DNA
- 3av1, 2av2, 3av2, 3waa, 3wa9, 3w99, 3w98, 3w97, 3w96, 5x7x, 3a6n, 3afa, 2cv5, 5jrg, 5gxq, 5gt3, 5gt0, 5gsu, 5gse, 5cpk, 5cpj, 5cpi, 5b33, 5b32, 5b31, 5b2j, 5b2i, 5b24, 5b0z, 5b0y, 5ay8, 5avc, 5avb, 5av9, 5av8, 5av6, 5av5, 5z5t, 4ym6, 4ym5, 5y0c, 5onw, 5ong, 5omx, 6ipu, 6iq4, 6jou, 6jr0, 6jr1, 6jxd, 6k1i, 6k1j, 6j1k, 6ke9, 6kvd, 6l9h, 6le9 – hH3.2 + H4 + H2A + H2B + DNA
- 6r0c, 6t79, 6r94, 6r93, 6l4a, 6t93 – hH3 + H4 + H2A + H2B + DNA – Cryo EM
- 5x0y, 5x0x – hH3 + H4 + H2A + H2B + DNA + SNF2
- 5z30 – hH3.1 + H4 + H2A (mutant) + H2B + DNA
- 5y0d – hH3.1 + H4 + H2A + H2B (mutant) + DNA
- 4qlc – hH3 + H4 + H2A + H2B + H5 + DNA
- 6r25 – hH3 + H4 + H2A + H2B + NPAC + lysine-specific histone demethylase + DNA – Cryo EM
- 3ayw, 3aze, 3azf, 3azg, 3azh - hH3.1 (mutant) + H4 + H2A + H2B + DNA
- 6r94, 6r93 - hH3.1 + H4 + H2A + H2B + DNA – Cryo EM
- 6r92, 6r91, 6r90, 6r8z, 6r8y - hH3.1 + H4 + H2A + H2B + DNA damage-binding protein + DNA – Cryo EM
- 3azi, 3azj, 3azk, 3azl, 3azm, 3azn, 5b40 - hH3.1 + H4 (mutant) + H2A + H2B + DNA
- 5e5a - hH3.2 + H4 + H2A + H2B + IE1 + DNA
- 6pwx - hH3.2 + H4 + H2A + H2B + RBBP-5 + DNA – Cryo EM
- 6t7a, 6t7b, 6t7c, 6t7d - hH3.2 + H4 + H2A + H2B + SOX + DNA – Cryo EM
- 6t90, 6yov - hH3.2 + H4 + H2A + H2B + SOX + OCT4 + DNA – Cryo EM
- 6rny - hH3.3 + H4 + H2A + H2B + integrase + DNA – Cryo EM
- 6upk, 6upl - hH3.1 + H4 + H2A + H2B + FACT complex + DNA – Cryo EM
- 6v92 – hH3 + H4 + H2A + H2B + RSC complex + DNA – Cryo EM
- 6hkt - hH3 + H2A + H2B + DNA
- 5xf5, 5xf4, 5xf3 - hH3.1 + H4 + H2A + H2B + Ru derivative + DNA
- 3an2, 4x23 – hH4 + H2A + H2B + H3-like centromeric protein + DNA
- Xenopus nucleosome core + DNA
- 6r1t, 6px1 - XlH3 + H2A + H2B + DNA – Cryo EM
- 3mnn, 3o62, 3lz0, 3lz1, 3lel, 3kuy, 3c1b, 3c1c, 2nzd, 2fj7, 1zbb, 1s32, 1p34, 1p3a, 1p3b, 1p3f, 1p3g, 1p3i, 1p3k, 1p3l, 1p3m, 1p3o, 1p3p, 1m18, 1m19, 1m1a, 1kx3, 1kx4, 1kx5, 1aoi, 3reh, 3rei, 3rej, 3rek, 3rel, 3ut9, 3uta, 3utb, 5f99, 5dnn, 5dnm, 5cp6, 4z66, 4ys3, 4xzq, 5oy7, 5oxv - XlH3.2 + H4 + H2A + H2B + DNA
- 6fq8, 6fq6, 6fq5, 6esi, 6esh, 6esg, 6esf - XlH3.2 + H4 + H2A + H2B + DNA – Cryo EM
- 5nl0 - XlH3.2 + H4 + H2A + H2B + H1.0 + DNA
- 6om3 - XlH3.2 + H4 + H2A + H2B + origin recognition complex + DNA
- 6vyp - XlH3 + H4 + H2A + H2B + LSD1 + COREST + DNA
- 6jm9, 6nzo, 6px3 - XlH3.2 + H4 + H2A + H2B + histone-lysine methyltransferase + DNA – Cryo EM
- 6ryr, 6ryu - XlH3.2 + H4 + H2A + H2B + CHD4 + DNA – Cryo EM
- 6s01 - XlH3.2 + H4 + H2A + H2B + PC4 and SFRS1-interacting protein + DNA – Cryo EM
- 6o96, 6nqa, 6nog, 6nn6, 6nj9, 6jma, 6j99 - XlH3.2 + H4 + H2A + H2B + histone-lysine methyltransferase + ubiquitin + DNA – Cryo EM
- 6pa7 - XlH3.2 + H4 + H2A + H2B + DMMT3A + DMMT3B + DNA – Cryo EM
- 6kiu, 6kiv, 6kiw, 6kix, 6kiz - XlH3 + H4 + H2A + H2B + histone-lysine methyltransferase + RBBP-5 + ASH2-like protein + WD repeat-containing protein + ubiquitin + DNA – Cryo EM
- 6iy3, 6iy2 - XlH3.2 + H4 + H2A + H2B + SNF2H + ADP + DNA – Cryo EM
- 5o9g - XlH3.2 + H4 + H2A + H2B + CHD1 + DNA – Cryo EM
- 6ftx - XlH3.1 + H4 + H2A + H2B + CHD1 + ubiquitin + DNA – Cryo EM
- 6hts - XlH3.1 + H4 + H2A + H2B + RuvB + CHD1 + actin-related protein + DNA – Cryo EM
- 6ne3 - XlH3.2 (mutant) + H4 + H2A (mutant) + H2B + SNF2H + DNA – Cryo EM
- 5mlu - XlH3.2 + H4 + H2A + H2B + PFV GAG peptide + DNA
- 5kgf - XlH3.2 + H4 + H2A + H2B + 53BP1 + ubiquitin + DNA
- 5hq2 - XlH3.2 + H4 + H2A + H2B + SRM1 + SetD8 + DNA
- 4zux - XlH3.2 + H4 + H2A + H2B + Saga-associated factors + polyubiquitin + UBP8 + DNA
- 4xuj - XlH3.2 + H4 + H2A + H2B + Ru derivative + DNA
- 4xu9 - XlH3.2 (mutant) + H4 + H2A + H2B + Pt derivative + DNA
- 4xu8 - XlH3.2 + H4 + H2A + H2B (mutant) + Pt derivative + DNA
- 2f8n - XlH3.1 + H4 + H2A + H2B + H3 + H2A macro domain + DNA
- 1zla – XlH3 + H4 + H2A + H2B + H3 + antigen + DNA
- 3mgp, 3mgq, 3mgr, 3mgs, 3lja, 3b6f, 3b6g, 4j8u, 4j8v, 4j8w, 4j8x, 4kgc, 5xf6 - XlH3.2 + H4 + H2A + H2B + metal ion + DNA
- 3kxb - XlH3.2 (mutant) + H4 + H2A + H2B (mutant) + DNA
- 3kwq - XlH3.2 (mutant) + H4 + H2A + H2B + DNA
- 3mvd - XlH3.2 + H4 + H2A + H2B + regulator of chromosome condensation + DNA
- 3tu4 - XlH3.2 + H4 + H2A + H2B + regulatory protein SIR3 + DNA
- 4r8p - XlH3.2 + H4 + H2A + H2B + polycomb complex protein + ring finger protein + DNA
- 6r1u – XlH3.2 + H4 + H2A + H2B + lysine-specific histone demethylase + DNA – Cryo EM
- 6k1p, 6jyl, 6iro – XlH3 + H4 + H2A + H2B + ISWI + ADP + DNA – Cryo EM
- 6g0l – XlH3 + H4 + H2A + H2B + CHD1 + DNA – Cryo EM
- 6kw3, 6kw4, 6tda – XlH3 + H4 + H2A + H2B + RSC complex + DNA – Cryo EM
- 6rny - hH3.3 + H4 + H2A + H2B + integrase + DNA – Cryo EM
- 6t9l – XlH3 + H4 + H2A + H2B + SAGA complex + DNA – Cryo EM
- 6ugm, 6uh5, 6ven – XlH3 + H4 + H2A + H2B + COMPASS complex + DNA – Cryo EM
- 6pwv, 6pww – XlH3 + H4 + H2A + H2B + MLL1 complex + DNA – Cryo EM
- 6uxw - hH3.3 + H4 + H2A + H2B + SWI/SNF complex + DNA + ADP – Cryo EM
- 6r1t, 6px1 - XlH3 + H2A + H2B + DNA – Cryo EM
- Other nucleosome core + DNA
- 1u35 - mH3.1 + H2A + H2B + His2A macro domain + DNA – mouse
- 5xm1, 5xm0 – mH3 + H4 + H2A + H2B + DNA
- 1f66 - XlH3 + mH4 + hH2A + XlH2B + DNA
- 5b1m, 5b1l - mH3 + H4 + H2A + H2B + DNA
- 2aro, 1tzy, 1hq3, 2hio, 1hio - cH3 + H4 + H2A + H2B
- 1eqz - cH3 + H4 + H2A + H2B + DNA
- 2pyo, 2nqb, 3nqb - DmH3 + H4 + H2A + H2B + DNA
- 6pwe - DmH3 + H4 + H2A + H2B + DNA – Cryo EM
- 6pwf - DmH3 + H4 + H2A + H2B + chromatin remodeling factor + DNA – Cryo EM
- 5wcu - DmH3 + H4 + H2A + H2B + H5 + DNA
- 4x23 - DmH3 + H4 + H2A + H2B + centromeric protein C + DNA
- 6dzt - DmH3 + H4 + H2A + H2B + antibody + DNA
- 6j51, 6j50, 6j4z, 6j4y, 6j4x, 6j4w, 6inq, 6i84, 6a5u, 6a5t, 6a5r, 6a5p, 6a5o, 6a5l – yH3.3 + H4 + H2A + H2B + RNA polymerase + RNA + DNA – Cryo EM
- 6ir9 – yH3.3 + H4 + H2A + H2B + RNA polymerase + SPT4 + SPT5 + RNA + DNA – Cryo EM
- 6gen, 6gej – yH3 + H4 + H2A + H2B + SWI1 + actin-like protein + vacuolar protein sorting-associated + RNA + DNA – Cryo EM
- 1id3 - yH3 + H4 + H2A + H2B + DNA
- 4jjn, 4kud - yH3 + H4 + H2A.2 + H2B.2 + SIR3 + DNA
- 5zbb, 5zba - yH3 + H4 + RTT109 + ASF1
- 5z3v, 5z3u, 5z3o, 5z3l - yH3.2 + H4 + H2A + H2B + SNF2 + ADP + DNA – Cryo EM
- 6fml – H3.2 + H4 + H2A + H2B + RuvB + actin-related protein + IES6 + DNA – Chaetomium thermophilum - Cryo EM
- 6kxv - H3 + H4 + H2A + H2B + DNA – Leishmania major
- 1u35 - mH3.1 + H2A + H2B + His2A macro domain + DNA – mouse
