2adw | pdb_00002adw

Crystal structure of Echinomycin-(ACGTACGT)2 solved by SAD

spinqualitylabelsall models 2adw, resolution 1.60Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 2adw is a 8 chain structure with sequence from Streptomyces echinatus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Ligands: MES, NI, QUI, ZN NonStd Res: DSN, MVA, N2C, NCY Related: 185d, 193d, 1pfe, 1vs2, 1xvk, 1xvn, 1xvr, 2da8, 3go3 Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Publication Abstract from PubMed A new crystal form was obtained for the complex between (ACGTACGT)2 and echinomycin and X-ray data were collected to 1.6 A. The structure was phased by the SAD method based on a single unexpected anomalous scatterer that could be identified as a mixture of nickel and zinc by measurements of the anomalous scattering at different wavelengths. This cation is coordinated by two guanines from two different duplexes and four water molecules. The structure resembles previously reported crystal structures of DNA-echinomycin complexes, except that three of the eight base pairs flanking the echinomycin bisintercalator sites have the Watson-Crick rather than the Hoogsteen configuration. Hoogsteen binding was found for the corresponding base pairs of the crystallographically independent duplex, indicating that the two configurations are very close in energy. Serendipitous SAD phasing of an echinomycin-(ACGTACGT)2 bisintercalation complex.,Cuesta-Seijo JA, Weiss MS, Sheldrick GM Acta Crystallogr D Biol Crystallogr. 2006 Apr;62(Pt 4):417-24. Epub 2006, Mar 18. PMID:16552143 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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