Jmol/Using the console

The Jmol console may be used to obtain information, and to change the scene currently displayed. This may be useful while viewing a Proteopedia page, or while creating a 3D scene, achieving certain effects not possible with the Scene Authoring Tools alone. You can open the Jmol console via the right-click menu in the Jmol window, or via a dedicated button under the Jmol window in the SAT.

spinqualitylabelsall models Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Obtaining information show sequence This shows the residues that contain selected atoms show selected This shows which atoms are selected show coordinates This shows the coordinates of selected atoms show measurements This shows all the distances and angles that are displayed Changing the scene Covalent modifications This script shows carbohydrates and the protein side chains that are covalently linked to them as wireframe. select within(1.8, carbohydrate) and protein show selected select within(group, selected) select selected and (sidechain or alpha) select selected or carbohydrate wireframe on Here is an example, <scene name='78/786673/Gal_overal_view/1'>galactosidase<\scene>, and the Jmol commands used.

Proteopedia Page Contributors and Editors (what is this?)

Karsten Theis