7kr6 | pdb_00007kr6

Glycoside hydrolase family 16 endo-glucanase from Bacteroides ovatus in complex with G4G3G-2F-DNP

spinqualitylabelsall models 7kr6, resolution 1.56Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 7kr6 is a 2 chain structure with sequence from "bacteroides_fragilis_subsp._ovatus"_(eggerth_and_gagnon_1933)_holdeman_and_moore_1970 "bacteroides fragilis subsp. ovatus" (eggerth and gagnon 1933) holdeman and moore 1970. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Ligands: BGC, G2F Related: 6vho Gene: DW206_07605, DW890_00285, F3D51_00680, F3D58_00285, F3F38_18210 ("Bacteroides fragilis subsp. ovatus" (Eggerth and Gagnon 1933) Holdeman and Moore 1970) Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Publication Abstract from PubMed Small molecule irreversible inhibitors are valuable tools for determining catalytically important active-site residues and revealing key details of the specificity, structure, and function of glycoside hydrolases (GHs). beta-glucans that contain backbone beta(1,3) linkages are widespread in nature, e.g., mixed-linkage beta(1,3)/beta(1,4)-glucans in the cell walls of higher plants and beta(1,3)glucans in yeasts and algae. Commensurate with this ubiquity, a large diversity of mixed-linkage endoglucanases (MLGases, EC 3.2.1.73) and endo-beta(1,3)-glucanases (laminarinases, EC 3.2.1.39 and EC 3.2.1.6) have evolved to specifically hydrolyze these polysaccharides, respectively, in environmental niches including the human gut. To facilitate biochemical and structural analysis of these GHs, with a focus on MLGases, we present here the facile chemo-enzymatic synthesis of a library of active-site-directed enzyme inhibitors based on mixed-linkage oligosaccharide scaffolds and N-bromoacetylglycosylamine or 2-fluoro-2-deoxyglycoside warheads. The effectiveness and irreversibility of these inhibitors were tested with exemplar MLGases and an endo-beta(1,3)-glucanase. Notably, determination of inhibitor-bound crystal structures of a human-gut microbial MLGase from Glycoside Hydrolase Family 16 revealed the orthogonal labeling of the nucleophile and catalytic acid/base residues with homologous 2-fluoro-2-deoxyglycoside and N-bromoacetylglycosylamine inhibitors, respectively. We anticipate that the selectivity of these inhibitors will continue to enable the structural and mechanistic analyses of beta-glucanases from diverse sources and protein families. Orthogonal Active-Site Labels for Mixed-Linkage endo-beta-Glucanases.,Jain N, Tamura K, Dejean G, Van Petegem F, Brumer H ACS Chem Biol. 2021 May 14. doi: 10.1021/acschembio.1c00063. PMID:33988963 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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