6kuz | pdb_00006kuz

E.coli beta-galactosidase (E537Q) in complex with fluorescent probe KSL01

spinqualitylabelsall models 6kuz, resolution 2.83Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 6kuz is a 4 chain structure with sequence from Ecoli. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Ligands: DMS, DVL, GOL, MG, NA Gene: lacZ, b0344, JW0335 (ECOLI) Activity: Beta-galactosidase, with EC number 3.2.1.23 Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Publication Abstract from PubMed Human senescence-associated beta-galactosidase (SA-beta-gal), the most widely used biomarker of aging, is a valuable tool for assessing the extent of cell 'healthy aging' and potentially predicting the health life span of an individual. Human SA-beta-gal is an endogenous lysosomal enzyme expressed from GLB1, the catalytic domain of which is very different from that of E. coli beta-gal, a bacterial enzyme encoded by lacZ. However, existing chemical probes for this marker still lack the ability to distinguish human SA-beta-gal from beta-gal of other species, such as bacterial beta-gal, which can yield false positive signals. Here, we show a molecular design strategy to construct fluorescent probes with the above ability with the aid of structure-based steric hindrance adjustment catering to different enzyme pockets. The resulting probes normally work as traditional SA-beta-gal probes, but they are unique in their powerful ability to distinguish human SA-beta-gal from E. coli beta-gal, thus achieving species-selective visualization of human SA-beta-gal for the first time. NIR-emitting fluorescent probe KSL11 as their representative further displays excellent species-selective recognition performance in biological systems, which has been herein verified by testing in senescent cells, in lacZ-transfected cells and in E. coli-beta-gal-contaminated tissue sections of mice. Because of our probes, it was also discovered that SA-beta-gal content in mice increased gradually with age and SA-beta-gal accumulated most in the kidneys among the main organs of naturally aging mice, suggesting that the kidneys are the organs with the most severe aging during natural aging. First-generation species-selective chemical probes for fluorescence imaging of human senescence-associated beta-galactosidase.,Li X, Qiu W, Li J, Chen X, Hu Y, Gao Y, Shi D, Li X, Lin H, Hu Z, Dong G, Sheng C, Jiang B, Xia C, Kim CY, Guo Y, Li J Chem Sci. 2020 Jun 17;11(28):7292-7301. doi: 10.1039/d0sc01234c. PMID:34123013 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See Also Galactosidase 3D structures

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