3nph | pdb_00003nph

Crystal structure of the pfam00427 domain from Synechocystis sp. PCC 6803

spinqualitylabelsall models 3nph, resolution 1.85Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 3nph is a 1 chain structure with sequence from Aphanocapsa sp. (strain n-1). Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Function [PYR2_SYNY3] Rod linker protein, associated with phycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer. Publication Abstract from PubMed Phycobilisomes are light-harvesting supramolecular complexes in cyanobacteria and red algae. Linkers play a pivotal role in the assembly and energy transfer modulation of phycobilisomes. However, how linkers function remains unclear due to the lack of structural and biochemical studies of linkers, especially the N-terminal domain of L(R) (pfam00427). Here, we report the crystal structure of the pfam00427 domain of the linker L(R) (30) from Synechocystis sp. PCC 6803 at 1.9 A. The pfam00427 presents as a previously uncharacterized point symmetric six alpha-helix bundle. To elucidate the binding style of pfam00427 in the C-phycocyanin (C-PC) (alphabeta)(6) hexamer, we fixed pfam00427 computationally into the C-PC (alphabeta)(6) inner cavity using the program AutoDock. Combined with a conserved 'C-PC binding patch' on pfam00427 identified, we arrived at a model for the pfam00427-C-PC (alphabeta)(6) complex. This model was further optimized and evaluated as a reasonable result by a molecular dynamics simulation. In the resulting model, the pfam00427 domain is stably positioned in the central hole of the C-PC trimer. Moreover, the L(RT) (pfam01383) was docked into our pfam00427-C-PC model to generate a complete phycobilisome rod in which the linkers join individual biliprotein hexamers. Crystal structure of the N-terminal domain of linker L(R) and the assembly of cyanobacterial phycobilisome rods.,Gao X, Zhang N, Wei TD, Su HN, Xie BB, Dong CC, Zhang XY, Chen XL, Zhou BC, Wang ZX, Wu JW, Zhang YZ Mol Microbiol. 2011 Nov;82(3):698-705. doi:, 10.1111/j.1365-2958.2011.07844.x. Epub 2011 Oct 10. PMID:21923764 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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