4a72 | pdb_00004a72

Crystal structure of the omega transaminase from Chromobacterium violaceum in a mixture of apo and PLP-bound states

spinqualitylabelsall models 4a72, resolution 2.40Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 4a72 is a 4 chain structure with sequence from "chromobacterium_janthinum"_(zopf)_ford_1927 "chromobacterium janthinum" (zopf) ford 1927. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Ligands: PLP Related: 4a6t, 4a6u, 4a6r Activity: Beta-alanine--pyruvate transaminase, with EC number 2.6.1.18 Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Publication Abstract from PubMed The bacterial omega-transaminase from Chromobacterium violaceum (Cv-omegaTA, EC2.6.1.18) catalyses industrially important transamination reactions by use of the coenzyme pyridoxal 5'-phosphate (PLP). Here, we present four crystal structures of Cv-omegaTA: two in the apo form, one in the holo form and one in an intermediate state, at resolutions between 1.35 and 2.4 A. The enzyme is a homodimer with a molecular mass of approximately 100 kDa. Each monomer has an active site at the dimeric interface that involves amino acid residues from both subunits. The apo-Cv-omegaTA structure reveals unique 'relaxed' conformations of three critical loops involved in structuring the active site that have not previously been seen in a transaminase. Analysis of the four crystal structures reveals major structural rearrangements involving elements of the large and small domains of both monomers that reorganize the active site in the presence of PLP. The conformational change appears to be triggered by binding of the phosphate group of PLP. Furthermore, one of the apo structures shows a disordered 'roof ' over the PLP-binding site, whereas in the other apo form and the holo form the 'roof' is ordered. Comparison with other known transaminase crystal structures suggests that ordering of the 'roof' structure may be associated with substrate binding in Cv-omegaTA and some other transaminases. DATABASE: The atomic coordinates and structure factors for the Chromobacterium violaceumomega-transaminase crystal structures can be found in the RCSB Protein Data Bank (https://www.rcsb.org) under the accession codes 4A6U for the holoenzyme, 4A6R for the apo1 form, 4A6T for the apo2 form and 4A72 for the mixed form STRUCTURED DIGITAL ABSTRACT: * -transaminases and -transaminases bind by dynamic light scattering (View interaction) * -transaminase and -transaminase bind by x-ray crystallography (View interaction) * -transaminase and -transaminase bind by x-ray crystallography (View interaction). Crystal structures of the Chromobacterium violaceumomega-transaminase reveal major structural rearrangements upon binding of coenzyme PLP.,Humble MS, Cassimjee KE, Hakansson M, Kimbung YR, Walse B, Abedi V, Federsel HJ, Berglund P, Logan DT FEBS J. 2012 Mar;279(5):779-92. doi: 10.1111/j.1742-4658.2012.08468.x. Epub 2012 , Jan 23. PMID:22268978 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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